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2024
Attia, N. F., S. E. A. Elashery, M. A. Nour, A. Policicchio, R. G. Agostino, M. Abd-Ellah, S. Jiang, and H. Oh, "Recent advances in sustainable and efficient hydrogen storage nanomaterials", Journal of Energy Storage, vol. 100, pp. 113519, 2024.
Tareco Bucho, T. M., L. Petrychenko, M. A. Abdelatty, N. Bogveradze, Z. Bodalal, R. G. H. Beets-Tan, and S. Trebeschi, "Reproducing RECIST lesion selection via machine learning: Insights into intra and inter-radiologist variation.", European journal of radiology open, vol. 12, pp. 100562, 2024. Abstract

BACKGROUND: The Response Evaluation Criteria in Solid Tumors (RECIST) aims to provide a standardized approach to assess treatment response in solid tumors. However, discrepancies in the selection of measurable and target lesions among radiologists using these criteria pose a significant limitation to their reproducibility and accuracy. This study aimed to understand the factors contributing to this variability.

METHODS: Machine learning models were used to replicate, in parallel, the selection process of measurable and target lesions by two radiologists in a cohort of 40 patients from an internal pan-cancer dataset. The models were trained on lesion characteristics such as size, shape, texture, rank, and proximity to other lesions. Ablation experiments were conducted to evaluate the impact of lesion diameter, volume, and rank on the selection process.

RESULTS: The models successfully reproduced the selection of measurable lesions, relying primarily on size-related features. Similarly, the models reproduced target lesion selection, relying mostly on lesion rank. Beyond these features, the importance placed by different radiologists on different visual characteristics can vary, specifically when choosing target lesions. Worth noting that substantial variability was still observed between radiologists in both measurable and target lesion selection.

CONCLUSIONS: Despite the successful replication of lesion selection, our results still revealed significant inter-radiologist disagreement. This underscores the necessity for more precise guidelines to standardize lesion selection processes and minimize reliance on individual interpretation and experience as a means to bridge existing ambiguities.

Maroofian, R., P. Sarraf, T. J. O'Brien, M. Kamel, A. Cakar, N. Elkhateeb, T. Lau, S. J. Patil, C. J. Record, A. Horga, et al., "Reticulon 2 deficiency results in an autosomal recessive distal motor neuropathy with lower limb spasticity.", Brain : a journal of neurology, 2024. Abstract

Heterozygous RTN2 variants have been previously identified in a limited cohort of families affected by autosomal dominant spastic paraplegia (SPG12-OMIM:604805) with a variable age of onset. Nevertheless, the definitive validity of SPG12 remains to be confidently confirmed due to scarcity of supporting evidence. In our study, we identified and validated seven novel or ultra-rare homozygous loss-of-function RTN2 variants in 14 individuals from seven consanguineous families with distal hereditary motor neuropathy (dHMN) using exome, genome and Sanger sequencing coupled with deep-phenotyping. All affected individuals (seven males and seven females, aged 9-50 years) exhibited weakness in the distal upper and lower limbs, lower limb spasticity, hyperreflexia, with an onset in the first decade of life. Nerve conduction studies revealed axonal motor neuropathy with neurogenic changes in the electromyography. Despite a slowly progressive disease course, all patients remained ambulatory over a mean disease duration of 19.71 ± 13.70 years. Characterisation of C. elegans RTN2 homolog loss-of-function variants demonstrated morphological and behavioural differences compared to the parental strain. Treatment of the mutant with an endoplasmic/sarcoplasmic reticulum Ca2+ reuptake inhibitor (2,5-di-tert-butylhydroquinone) rescued key phenotypic differences, suggesting a potential therapeutic benefit for RTN2-disorder. Despite Reticulon-2 being an endoplasmic reticulum (ER)-resident membrane shaping protein, our analysis of patient fibroblast cells did not find significant alterations in ER structure or the response to ER stress. Our findings delineate a distinct form of autosomal recessive dHMN with pyramidal features associated with Reticulon-2 deficiency. This phenotype shares similarities with SIGMAR1-related dHMN, and Silver-like syndromes, providing valuable insights into the clinical spectrum and potential therapeutic strategies for RTN2-related dHMN.

Vitale, A., V. Caggiano, A. Tufan, G. Ragab, E. D. Batu, P. Portincasa, E. Aragona, J. Sota, G. Conti, and A. de Paulis, "Risk for cancer development in familial Mediterranean fever and associated predisposing factors: an ambidirectional cohort study from the international AIDA Network registries", Frontiers in Immunology, vol. 15: Frontiers Media SA, pp. 1397890, 2024. Abstract
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Vitale, A., V. Caggiano, A. Tufan, G. Ragab, E. D. Batu, P. Portincasa, E. Aragona, J. Sota, G. Conti, A. de Paulis, et al., "Risk for cancer development in familial Mediterranean fever and associated predisposing factors: an ambidirectional cohort study from the international AIDA Network registries.", Frontiers in immunology, vol. 15, pp. 1397890, 2024. Abstract

OBJECTIVE: Inflammation has been associated with an increased risk for cancer development, while innate immune system activation could counteract the risk for malignancies. Familial Mediterranean fever (FMF) is a severe systemic inflammatory condition and also represents the archetype of innate immunity deregulation. Therefore, the aim of this study is to investigate the risk for cancer development in FMF.

METHODS: The risk ratio (RR) for malignancies was separately compared between FMF patients and fibromyalgia subjects, Still's disease patients and Behçet's disease patients. Clinical variables associated with cancer development in FMF patients were searched through binary logistic regression.

RESULTS: 580 FMF patients and 102 fibromyalgia subjects, 1012 Behçet's disease patients and 497 Still's disease patients were enrolled. The RR for the occurrence of malignant neoplasms was 0.26 (95% Confidence Interval [CI.] 0.10-0.73, p=0.006) in patients with FMF compared to fibromyalgia subjects; the RR for the occurrence of malignant cancer was 0.51 (95% CI. 0.23-1.16, =0.10) in FMF compared to Still's disease and 0.60 (95% CI. 0.29-1.28, =0.18) in FMF compared to Behçet's disease. At logistic regression, the risk of occurrence of malignant neoplasms in FMF patients was associated with the age at disease onset (β1 = 0.039, 95% CI. 0.001-0.071, =0.02), the age at the diagnosis (β1 = 0.048, 95% CI. 0.039-0.085, =0.006), the age at the enrolment (β1 = 0.05, 95% CI. 0.007-0.068, =0.01), the number of attacks per year (β1 = 0.011, 95% CI. 0.001- 0.019, =0.008), the use of biotechnological agents (β1 = 1.77, 95% CI. 0.43-3.19, =0.009), the use of anti-IL-1 agents (β1 = 2.089, 95% CI. 0.7-3.5, =0.002).

CONCLUSIONS: The risk for cancer is reduced in Caucasic FMF patients; however, when malignant neoplasms occur, this is more frequent in FMF cases suffering from a severe disease phenotype and presenting a colchicine-resistant disease.

Prasad, P. S., A. S. Lakshmi, S. Kautish, S. P. Singh, R. K. Shrivastava, A. S. Almazyad, H. M. Zawbaa, and A. W. Mohamed, "Robust Facial Biometric Authentication System Using Pupillary Light Reflex for Liveness Detection of Facial Images.", CMES-Computer Modeling in Engineering & Sciences, vol. 139, issue 1, 2024. Abstract
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Shahror, R. A., C. A. Morris, A. A. Mohammed, M. Wild, B. Zaman, C. D. Mitchell, P. H. Phillips, N. J. Rusch, E. shosha, and A. Y. Fouda, "Role of myeloid cells in ischemic retinopathies: recent advances and unanswered questions.", Journal of neuroinflammation, vol. 21, issue 1, pp. 65, 2024. Abstract

Myeloid cells including microglia and macrophages play crucial roles in retinal homeostasis by clearing cellular debris and regulating inflammation. These cells are activated in several blinding ischemic retinal diseases including diabetic retinopathy, where they may exert both beneficial and detrimental effects on neurovascular function and angiogenesis. Myeloid cells impact the progression of retinal pathologies and recent studies suggest that targeting myeloid cells is a promising therapeutic strategy to mitigate diabetic retinopathy and other ischemic retinal diseases. This review summarizes the recent advances in our understanding of the role of microglia and macrophages in retinal diseases and focuses on the effects of myeloid cells on neurovascular injury and angiogenesis in ischemic retinopathies. We highlight gaps in knowledge and advocate for a more detailed understanding of the role of myeloid cells in retinal ischemic injury to fully unlock the potential of targeting myeloid cells as a therapeutic strategy for retinal ischemia.

Shahror, R. A., C. A. Morris, A. A. Mohammed, M. Wild, B. Zaman, C. D. Mitchell, P. H. Phillips, N. J. Rusch, E. shosha, and A. Y. Fouda, "Role of myeloid cells in ischemic retinopathies: recent advances and unanswered questions.", Journal of neuroinflammation, vol. 21, issue 1, pp. 65, 2024. Abstract

Myeloid cells including microglia and macrophages play crucial roles in retinal homeostasis by clearing cellular debris and regulating inflammation. These cells are activated in several blinding ischemic retinal diseases including diabetic retinopathy, where they may exert both beneficial and detrimental effects on neurovascular function and angiogenesis. Myeloid cells impact the progression of retinal pathologies and recent studies suggest that targeting myeloid cells is a promising therapeutic strategy to mitigate diabetic retinopathy and other ischemic retinal diseases. This review summarizes the recent advances in our understanding of the role of microglia and macrophages in retinal diseases and focuses on the effects of myeloid cells on neurovascular injury and angiogenesis in ischemic retinopathies. We highlight gaps in knowledge and advocate for a more detailed understanding of the role of myeloid cells in retinal ischemic injury to fully unlock the potential of targeting myeloid cells as a therapeutic strategy for retinal ischemia.

Xu, X., L. Li, H. - C. Chen, X. Zhang, Y. Huang, M. Humayun, Y. A. Attia, Y. Pang, D. Wang, X. Wang, et al., "Ru-Enriched Metal−Organic Framework Enabling a Self-Powered Hydrogen Production System", ACS Catalysis, vol. 14, pp. 12051−12063, 2024. xu-et-al-2024-ru-enriched-metal-organic-framework-enabling-a-self-powere....pdf
Hayrapetyan, A., R. Erbacher, C. A. Carrillo Montoya, D. M. Newbold, W. Carvalho, N. Karunarathna, M. Górski, M. Sommerhalder, C. Lindsey, N. Parmar, et al., Searches for violation of Lorentz invariance in $$\backslash$mathrm $\{$t$\}$$\backslash$overline $\{$$\backslash$mathrm $\{$t$\}$$\}$ $ production using dilepton events in proton-proton collisions at $$\backslash$sqrt $\{$s$\}$= $13 TeV, , 2024. Abstract
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AboDalam, H., F. A. Kamel, M. A. Alghuthaymi, L. Muthulakshmi, M. A. Gacem, R. Periakaruppan, and K. A. Abd-Elsalam, "Selenium-based nanoparticles: Novel fungicides for enhanced crop protection", Nanofungicides: Elsevier, pp. 329-348, 2024. Abstract
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Abdelaal, T., L. M. Grossouw, J. R. Pasterkamp, B. P. F. Lelieveldt, M. J. T. Reinders, and A. Mahfouz, "SIRV: spatial inference of RNA velocity at the single-cell resolution.", NAR genomics and bioinformatics, vol. 6, issue 3, pp. lqae100, 2024. Abstract

RNA Velocity allows the inference of cellular differentiation trajectories from single-cell RNA sequencing (scRNA-seq) data. It would be highly interesting to study these differentiation dynamics in the spatial context of tissues. Estimating spatial RNA velocities is, however, limited by the inability to spatially capture spliced and unspliced mRNA molecules in high-resolution spatial transcriptomics. We present SIRV, a method to spatially infer RNA velocities at the single-cell resolution by enriching spatial transcriptomics data with the expression of spliced and unspliced mRNA from reference scRNA-seq data. We used SIRV to infer spatial differentiation trajectories in the developing mouse brain, including the differentiation of midbrain-hindbrain boundary cells and marking the forebrain origin of the cortical hem and diencephalon cells. Our results show that SIRV reveals spatial differentiation patterns not identifiable with scRNA-seq data alone. Additionally, we applied SIRV to mouse organogenesis data and obtained robust spatial differentiation trajectories. Finally, we verified the spatial RNA velocities obtained by SIRV using 10x Visium data of the developing chicken heart and MERFISH data from human osteosarcoma cells. Altogether, SIRV allows the inference of spatial RNA velocities at the single-cell resolution to facilitate studying tissue development.

Gordon, R. A., Y. Nguyen, N. Foulquier, M. Beydon, T. A. Gheita, R. Hajji, I. Sahbudin, A. Hoi, W. - F. Ng, J. A. Mendonça, et al., "The Sjögren's Working Group: The 2023 OMERACT meeting and provisional domain generation.", Seminars in arthritis and rheumatism, vol. 65, pp. 152378, 2024. Abstract

Sjögren's disease (SjD) is a systemic autoimmune exocrinopathy with key features of dryness, pain, and fatigue. SjD can affect any organ system with a variety of presentations across individuals. This heterogeneity is one of the major barriers for developing effective disease modifying treatments. Defining core disease domains comprising both specific clinical features and incorporating the patient experience is a critical first step to define this complex disease. The OMERACT SjD Working Group held its first international collaborative hybrid meeting in 2023, applying the OMERACT 2.2 filter toward identification of core domains. We accomplished our first goal, a scoping literature review that was presented at the Special Interest Group held in May 2023. Building on the domains identified in the scoping review, we uniquely deployed multidisciplinary experts as part of our collaborative team to generate a provisional domain list that captures SjD heterogeneity.

Alhaddad, H., O. E. Ospina, M. L. Khaled, Y. Ren, E. Vallebuona, M. B. Boozo, P. A. Forsyth, Y. Pina, R. Macaulay, V. Law, et al., "Spatial transcriptomics analysis identifies a tumor-promoting function of the meningeal stroma in melanoma leptomeningeal disease.", Cell reports. Medicine, vol. 5, issue 6, pp. 101606, 2024. Abstractspatial_transcriptomics_analysis_identifies_a_tumor-promoting_function_of_the_meningeal_stroma_in_melanoma_leptomeningeal_disease.pdf

Leptomeningeal disease (LMD) remains a rapidly lethal complication for late-stage melanoma patients. Here, we characterize the tumor microenvironment of LMD and patient-matched extra-cranial metastases using spatial transcriptomics in a small number of clinical specimens (nine tissues from two patients) with extensive in vitro and in vivo validation. The spatial landscape of melanoma LMD is characterized by a lack of immune infiltration and instead exhibits a higher level of stromal involvement. The tumor-stroma interactions at the leptomeninges activate tumor-promoting signaling, mediated through upregulation of SERPINA3. The meningeal stroma is required for melanoma cells to survive in the cerebrospinal fluid (CSF) and promotes MAPK inhibitor resistance. Knocking down SERPINA3 or inhibiting the downstream IGR1R/PI3K/AKT axis results in tumor cell death and re-sensitization to MAPK-targeting therapy. Our data provide a spatial atlas of melanoma LMD, identify the tumor-promoting role of meningeal stroma, and demonstrate a mechanism for overcoming microenvironment-mediated drug resistance in LMD.

Prasad, A., M. M. Bakr, and A. N. ElMeshad, "Surface-Functionalized Polymeric Nanoparticles for Breast Cancer Treatment:Processes and Advances", Journal of Drug Targeting, pp. 1-37, 2024.
Elghazaly, H., H. A. Azim, H. S. Rugo, D. Cameron, S. M. Swain, G. Curigliano, N. Harbeck, D. Tripathy, B. Arun, M. Aapro, et al., "Tailoring neo/adjuvant systemic therapy in breast cancer: "The advent of a personalized approach"-The Breast-Gynecological and Immuno-Oncology International Cancer Conference (BGICC) consensus and recommendations.", Cancer , 2024.
Wang, F., R. Pang, H. Konietzky, K. Hu, B. - G. He, D. - H. Meng, and M. Ismael, "Temperature driven real-time weakening and strengthening mechanisms of unconfined granite", Geothermics, vol. 119, pp. 102973, 2024. AbstractWebsite

The distinctive mechanical behaviors exhibited by granite under real-time temperature (RT) and after thermal treatment (AT) highlight a challenge in directly observing real-time cracking phenomena in RT granite within a laboratory setting. To overcome this limitation, a thermo-mechanical coupled grain-based model (GBM) was introduced for numerical investigations. The simulation outcomes reveal that disparities in mechanical responses between AT and RT specimens are attributed not merely to the count of thermally induced cracks, but rather to intricate grain-contact deformations arising from heterogeneous crystal expansions/contractions and the intricate interplay of direction-independent interactions along block edges. During elastic deformation, RT grain contacts with larger deformation reach the peak stress faster than AT contacts. Failed contacts have smaller residual cohesion under temperature with larger deformation due to the stronger slip-weakening effect. Moreover, shear displacements and grain rotations can create new interlocking, increasing granite stiffness after cooling. Consequently, the RT sample is softer to deform and fail, while the overall stress resistance of AT granite is higher due to cooling-induced micro-structure changes. These findings shed light on why the mechanical responses, including strength, stiffness, and plastic strain, of AT and RT granite are different.

Chatterjee, T., N. Ravichandran, N. Nair, A. E. Gracia-Ramos, B. Barman, P. Sen, M. Joshi, S. Saha, A. Nune, A. R. Pande, et al., "Type 1 diabetes, COVID-19 vaccines and short-term safety: Subgroup analysis from the global COVAD study.", Journal of diabetes investigation, vol. 15, issue 1, pp. 131-138, 2024. Abstract

AIMS/INTRODUCTION: Coronavirus disease 2019 (COVID-19) vaccinations have been proven to be generally safe in healthy populations. However, the data on vaccine safety in patients with type 1 diabetes are scarce. This study aimed to evaluate the frequency and severity of short-term (<7-day) adverse vaccination events (AEs) and their risk factors among type 1 diabetes patients.

MATERIALS AND METHODS: This study analyzed data from the COVID-19 vaccination in Autoimmune Diseases (COVAD) survey database (May to December 2021; 110 collaborators, 94 countries), comparing <7-day COVID-19 vaccine AE among type 1 diabetes patients and healthy controls (HCs). Descriptive statistics; propensity score matching (1:4) using the variables age, sex and ethnicity; and multivariate analyses were carried out.

RESULTS: This study analyzed 5,480 completed survey responses. Of all responses, 5,408 were HCs, 72 were type 1 diabetes patients (43 females, 48.0% white European ancestry) and Pfizer was the most administered vaccine (39%). A total of 4,052 (73.9%) respondents had received two vaccine doses. Patients with type 1 diabetes had a comparable risk of injection site pain, minor and major vaccine AEs, as well as associated hospitalizations to HCs. However, type 1 diabetes patients had a higher risk of severe rashes (3% vs 0.4%, OR 8.0, 95% confidence interval 1.7-36), P = 0.007), although reassuringly, these were rare (n = 2 among type 1 diabetes patients).

CONCLUSIONS: COVID-19 vaccination was safe and well tolerated in patients with type 1 diabetes with similar AE profiles compared with HCs, although severe rashes were more common in type 1 diabetes patients.

Rahmanian, V., M. Z. A. Ebrahim, S. A. Razavi, M. Abdelmigeed, E. Barbieri, S. Menegatti, G. N. Parsons, F. Li, T. Pirzada, and S. A. Khan, "Vapor phase synthesis of metal–organic frameworks on a nanofibrous aerogel creates enhanced functionality", Journal of Materials Chemistry A, vol. 12, no. 1: Royal Society of Chemistry, pp. 214–226, 2024. Abstract
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Heirati, N., V. Pitardi, and M. S. Temerak, "When the recipe is more important than the ingredients: Unveiling the complexity of consumer use of voice assistants", Psychology & Marketing, pp. 1-13, 2024.
Fouad, A. M., S. H. M. Shehata, D. D. Pawar, Z. Awad, A. Takey, and H. Dwidar, "X-ray study on the core collapse supernova 2008ax using XMM-Newton and Swift/XRT", Physica Scripta, vol. 99, issue 7, pp. 8, 2024.
2023
Tilz, R. R., V. Schmidt, H. Pürerfellner, P. Maury, K. R. J. ulian Chun, M. Martinek, C. Sohns, B. Schmidt, F. Mandel, E. Gandjbakhch, et al., A worldwide survey on incidence, management, and prognosis of oesophageal fistula formation following atrial fibrillation catheter ablation: the POTTER-AF study, , vol. 44, issue 27, pp. 2458 - 2469, 2023/07/14. AbstractWebsite

Oesophageal fistula represents a rare but dreadful complication of atrial fibrillation catheter ablation. Data on its incidence, management, and outcome are sparse.This international multicentre registry investigates the characteristics of oesophageal fistulae after treatment of atrial fibrillation by catheter ablation. A total of 553 729 catheter ablation procedures (radiofrequency: 62.9%, cryoballoon: 36.2%, other modalities: 0.9%) were performed, at 214 centres in 35 countries. In 78 centres 138 patients [0.025%, radiofrequency: 0.038%, cryoballoon: 0.0015% (P < 0.0001)] were diagnosed with an oesophageal fistula. Peri-procedural data were available for 118 patients (85.5%). Following catheter ablation, the median time to symptoms and the median time to diagnosis were 18 (7.75, 25; range: 0–60) days and 21 (15, 29.5; range: 2–63) days, respectively. The median time from symptom onset to oesophageal fistula diagnosis was 3 (1, 9; range: 0–42) days. The most common initial symptom was fever (59.3%). The diagnosis was established by chest computed tomography in 80.2% of patients. Oesophageal surgery was performed in 47.4% and direct endoscopic treatment in 19.8% and conservative treatment in 32.8% of patients. The overall mortality was 65.8%. Mortality following surgical (51.9%) or endoscopic treatment (56.5%) was significantly lower as compared to conservative management (89.5%) [odds ratio 7.463 (2.414, 23.072) P < 0.001].Oesophageal fistula after catheter ablation of atrial fibrillation is rare and occurs mostly with the use of radiofrequency energy rather than cryoenergy. Mortality without surgical or endoscopic intervention is exceedingly high.

Khaled, M. L., A. A. Tarhini, P. A. Forsyth, I. Smalley, and Y. Piña, "Leptomeningeal Disease (LMD) in Patients with Melanoma Metastases", Cancers, vol. 15, issue 6, no. 6, pp. 1884, 2023-03-21. Abstractleptomeningeal_disease_lmd_in_patients_with_melanoma_metastases.pdf

Leptomeningeal disease (LMD) is a devastating complication caused by seeding malignant cells to the cerebrospinal fluid (CSF) and the leptomeningeal membrane. LMD is diagnosed in 5–15% of patients with systemic malignancy. Management of LMD is challenging due to the biological and metabolic tumor microenvironment of LMD being largely unknown. Patients with LMD can present with a wide variety of signs and/or symptoms that could be multifocal and include headache, nausea, vomiting, diplopia, and weakness, among others. The median survival time for patients with LMD is measured in weeks and up to 3–6 months with aggressive management, and death usually occurs due to progressive neurologic dysfunction. In melanoma, LMD is associated with a suppressive immune microenvironment characterized by a high number of apoptotic and exhausted CD4+ T-cells, myeloid-derived suppressor cells, and a low number of CD8+ T-cells. Proteomics analysis revealed enrichment of complement cascade, which may disrupt the blood–CSF barrier. Clinical management of melanoma LMD consists primarily of radiation therapy, BRAF/MEK inhibitors as targeted therapy, and immunotherapy with anti-PD-1, anti-CTLA-4, and anti-LAG-3 immune checkpoint inhibitors. This review summarizes the biology and anatomic features of melanoma LMD, as well as the current therapeutic approaches.

Turner, D., A. N. Shkoporov, C. Lood, A. D. Millard, B. E. Dutilh, P. Alfenas-Zerbini, L. J. van Zyl, R. K. Aziz, H. M. Oksanen, and M. M. Poranen, Abolishment of morphology-based taxa and change to binomial species names: 2022 taxonomy update of the ICTV bacterial viruses subcommittee, , vol. 168, issue 2: Springer, pp. 74, 2023. Abstract
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Alaasar, M., C. Anders, R. Pashameah, and A. F. Darweesh, "Azopyridine-based hydrogen-bonded liquid crystals with thioether tail", Liquid Crystals: Taylor & Francis, pp. 1 - 16, 2023. Abstract

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