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2023
Hanafy, M., C. Hansen, Y. Phanse, C. - W. Wu, K. Nelson, S. A. Aschenbroich, and A. M. Talaat, "Characterization of early immune responses elicited by live and inactivated vaccines against Johne's disease in goats", Frontiers in Veterinary Science, vol. 9, 2023. AbstractWebsite

Mycobacterium avium subspecies paratuberculosis (M. paratuberculosis) is the causative agent of Johne's disease, a chronic debilitating condition affecting ruminants causing significant economic losses to the dairy industry. Available inactivated vaccines are not effective in controlling the disease and vaccinated animals can continue to infect newly born calves. Recently, we have shown that a live-attenuated vaccine candidate (pgsN) is protective in goats and calves following challenge with virulent strains of M. paratuberculosis. To decipher the dynamics of the immune responses elicited by both live-attenuated and inactivated vaccines, we analyzed key immunological parameters of goats immunized through different routes when a marker-less pgsN vaccine was used. Within a few weeks, the inactivated vaccine triggered the formation of granulomas both at the site of inoculation and in regional lymph nodes, that increased in size over time and persisted until the end of the experiment. In contrast, granulomas induced by the pgsN vaccine were small and subsided during the study. Interestingly, in this vaccine group, histology demonstrated an initial abundance of intra-histiocytic mycobacterial bacilli at the site of inoculation, with recruitment of very minimal T lymphocytes to poorly organized granulomas. Over time, granulomas became more organized, with recruitment of greater numbers of T and B lymphocytes, which coincided with a lack of mycobacteria. For the inactivated vaccine group, mycobacterial bacilli were identified extracellularly within the center of caseating granulomas, with relatively equal proportions of B- and T-lymphocytes maintained across both early and late times. Despite the differences in granuloma-specific lymphocyte recruitment, markers for cell-mediated immunity (e.g., IFN-γ release) were robust in both injected pgsN and inactivated vaccine groups. In contrast, the intranasal live-attenuated vaccine did not elicit any reaction at site of inoculation, nor cell-mediated immune responses. Finally, 80% of animals in the inactivated vaccine group significantly reacted to purified protein derivatives from M. bovis, while reactivity was detected in only 20% of animals receiving pgsN vaccine, suggesting a higher level of cross reactivity for bovine tuberculosis when inactivated vaccine is used. Overall, these results depict the cellular recruitment strategies driving immune responses elicited by both live-attenuated and inactivated vaccines that target Johne's disease.

Dlamini, N. H., T. Nguyen, A. Gad, D. Tesfaye, S. F. Liao, S. T. Willard, P. L. Ryan, and J. M. Feugang, "Characterization of Extracellular Vesicle-Coupled miRNA Profiles in Seminal Plasma of Boars with Divergent Semen Quality Status", International Journal of Molecular Sciences, vol. 24, no. 4, 2023. AbstractWebsite

Sperm heterogeneity creates challenges for successful artificial insemination. Seminal plasma (SP) surrounding sperm is an excellent source for detecting reliable non-invasive biomarkers of sperm quality. Here, we isolated microRNAs (miRNAs) from SP-derived extracellular vesicles (SP-EV) of boars with divergent sperm quality statuses. Raw semen from sexually mature boars was collected for eight weeks. Sperm motility and normal morphology were analyzed, and the sperm was classified as poor- or good-quality based on standard cutoffs of 70% for the parameters measured. SP-EVs were isolated by ultracentrifugation and confirmed by electron microscopy, dynamic light scattering, and Western immunoblotting. The SP-EVs were subjected to total exosome RNA isolation, miRNA sequencing, and bioinformatics analysis. The isolated SP-EVs were round spherical structures approximately 30–400 nm in diameter expressing specific molecular markers. miRNAs were detected in both poor- (n = 281) and good (n = 271)-quality sperm, with fifteen being differentially expressed. Only three (ssc-miR-205, ssc-miR-493-5p, and ssc-miR-378b-3p) allowed gene targeting associated with cellular localization (nuclear and cytosol) and molecular functions (acetylation, Ubl conjugation, and protein kinase binding), potentially impairing sperm quality. PTEN and YWHAZ emerged as essential proteins for protein kinase binding. We conclude that SP-EV-derived miRNAs reflect boar sperm quality to enable therapeutic strategies to improve fertility.

Sivaraman, R., F. M. A. Altalbawy, A. M. H. Wais, H. A. Lafta, and S. Hashemi, "Characterization of Plastic Deformation in CuZr Metallic Glasses Subjected to the Rolling Process", Advances in Materials Science and Engineering, vol. 2023, pp. 1-8, 2023. 4-hindawi-advances_in_materials_science_and_engineering.pdf
Saher, O., E. M. Zaghloul, T. Umek, D. W. Hagey, N. Mozafari, M. B. Danielsen, A. S. Gouda, K. E. Lundin, P. T. Jørgensen, J. Wengel, et al., "Chemical Modifications and Design Influence the Potency of Anti-Gene Oligonucleotides.", Nucleic acid therapeutics, vol. 33, issue 2, pp. 117-131, 2023. Abstract

Huntington's disease is a neurodegenerative, trinucleotide repeat (TNR) disorder affecting both males and females. It is caused by an abnormal increase in the length of CAG•CTG TNR in exon 1 of the gene (). The resultant, mutant HTT mRNA and protein cause neuronal toxicity, suggesting that reduction of their levels would constitute a promising therapeutic approach. We previously reported a novel strategy in which chemically modified oligonucleotides (ONs) directly target chromosomal DNA. These anti-gene ONs were able to downregulate both mRNA and protein. In this study, various locked nucleic acid (LNA)/DNA mixmer anti-gene ONs were tested to investigate the effects of varying ON length, LNA content, and fatty acid modification on expression. Altering the length did not significantly influence the ON potency, while LNA content was critical for activity. Utilization of palmitoyl-modified LNA monomers enhanced the ON activity relatively to the corresponding nonmodified LNA under serum starvation conditions. Furthermore, the number of palmitoylated LNA monomers and their positioning greatly affected ON potency. In addition, we performed RNA sequencing analysis, which showed that the anti-gene ONs affect the "immune system process, mRNA processing, and neurogenesis." Furthermore, we observed that for repeat containing genes, there is a higher tendency for antisense off-targeting. Taken together, our findings provide an optimized design of anti-gene ONs that could potentially be developed as DNA-targeting therapeutics for this class of TNR-related diseases.

Niu, X., C. Hu, S. Chen, J. Wen, X. Liu, Y. Yong, Z. Yu, Xingbin Ma, C. Li, M. Warda, et al., "Chitosan-gentamicin conjugate attenuates heat stress-induced intestinal barrier injury via the TLR4/STAT6/MYLK signaling pathway: In vitro and in vivo studies.", Carbohydrate polymers, vol. 321, pp. 121279, 2023. Abstract

Heat stress (HS) has a negative impact on animal health. A modified chitosan-gentamicin conjugate (CS-GT) was prepared to investigate its potential protective effects and mechanism of action on heat stress-induced intestinal mucosa injury in IPEC-J2 cells and mouse 3D intestinal organs in a mouse model. CS-GT significantly (P < 0.01) reversed the decline in transmembrane resistance and increased the FITC-dextran permeability of the IPEC-J2 monolayer fusion epithelium caused by heat stress. Heat stress decreased the expression of the tight binding proteins occludin, claudin1, and claudin2. However, pretreatment with CS-GT significantly increased (P < 0.01) the expression of these tight binding proteins. Mechanistically, CS-GT inhibited the activation of the TLR4/STAT6/MYLK signaling pathway induced by heat stress. Molecular docking showed that CS-GT can bind effectively with TLR4. In conclusion, CS-GT alleviates heat stress-induced intestinal mucosal damage both in vitro and in vivo. This effect is mediated, at least partly, by the inhibition of the TLR4/STAT6/MYLK signaling pathway and upregulation of tight junction proteins. These findings suggest that CS-GT may have therapeutic potential in the prevention and treatment of heat stress-related intestinal injury.

Mohammed K Rashed, Waleed M El-Senousy, ElSayed TA Sayed, and M. AlKhazindar, "Chlorine Inactivation of PhiX174 Bacteriophage in Treated Sewage and Drinking Water Samples", Egyptian Journal of Botany, vol. 63, issue 1, pp. 281-293, 2023.
Ismail, H. Y., N. A. Shaker, S. Hussein, A. Tohamy, M. Fathi, H. Rizk, and Y. R. Wally, "Cisplatin‑induced azoospermia and testicular damage ameliorated by adipose‑derived mesenchymal stem cells", Biological Research, vol. 56, issue 1, pp. 2, 2023.
Triggianese, P., A. Vitale, G. Lopalco, H. A. M. Giardini, F. Ciccia, I. Al-Maghlouth, P. Ruscitti, P. P. Sfikakis, F. Iannone, I. P. de Brito Antonelli, et al., "Clinical and laboratory features associated with macrophage activation syndrome in Still's disease: data from the international AIDA Network Still's Disease Registry.", Internal and emergency medicine, vol. 18, issue 8, pp. 2231-2243, 2023. Abstract

To characterize clinical and laboratory signs of patients with Still's disease experiencing macrophage activation syndrome (MAS) and identify factors associated with MAS development. Patients with Still's disease classified according to internationally accepted criteria were enrolled in the AutoInflammatory Disease Alliance (AIDA) Still's Disease Registry. Clinical and laboratory features observed during the inflammatory attack complicated by MAS were included in univariate and multivariate logistic regression analysis to identify factors associated to MAS development. A total of 414 patients with Still's disease were included; 39 (9.4%) of them developed MAS during clinical history. At univariate analyses, the following variables were significantly associated with MAS: classification of arthritis based on the number of joints involved (p = 0.003), liver involvement (p = 0.04), hepatomegaly (p = 0.02), hepatic failure (p = 0.01), axillary lymphadenopathy (p = 0.04), pneumonia (p = 0.03), acute respiratory distress syndrome (p < 0.001), platelet abnormalities (p < 0.001), high serum ferritin levels (p = 0.009), abnormal liver function tests (p = 0.009), hypoalbuminemia (p = 0.002), increased LDH (p = 0.001), and LDH serum levels (p < 0.001). At multivariate analysis, hepatomegaly (OR 8.7, 95% CI 1.9-52.6, p = 0.007) and monoarthritis (OR 15.8, 95% CI 2.9-97.1, p = 0.001), were directly associated with MAS, while the decade of life at Still's disease onset (OR 0.6, 95% CI 0.4-0.9, p = 0.045), a normal platelet count (OR 0.1, 95% CI 0.01-0.8, p = 0.034) or thrombocytosis (OR 0.01, 95% CI 0.0-0.2, p = 0.008) resulted to be protective. Clinical and laboratory factors associated with MAS development have been identified in a large cohort of patients based on real-life data.

Whittle, A. J., H. M. El-Naggar, S. A. Y. Akl, and A. M. Galaa, "Closure to “Stability Analysis of Upstream Tailings Dam Using Numerical Limit Analyses”", Journal of Geotechnical and Geoenvironmental Engineering, vol. 149, issue 3: American Society of Civil Engineers, pp. 07023002, 2023. Abstract
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Huang, D., M. S. Taha, A. L. Nocera, A. D. Workman, M. M. Amiji, and B. S. Bleier, Cold exposure impairs extracellular vesicle swarm–mediated nasal antiviral immunity, , 2023. Abstract

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Deng, T., J. Wu, H. Abdel-Shafy, X. Wang, H. Lv, A. Shaukat, X. Zhou, Y. Zhou, H. Sun, P. Wei, et al., "Comparative Genomic Analysis of the Thiolase Family and Functional Characterization of the Acetyl-Coenzyme A Acyltransferase-1 Gene for Milk Biosynthesis and Production of Buffalo and Cattle.", Journal of agricultural and food chemistry, vol. 71, issue 7, pp. 3325-3337, 2023. Abstract

Cattle and buffalo served as the first and second largest dairy animals, respectively, providing 96% milk products worldwide. Understanding the mechanisms underlying milk synthesis is critical to develop the technique to improve milk production. Thiolases, also known as acetyl-coenzyme A acetyltransferases (ACAT), are an enzyme family that plays vital roles in lipid metabolism, including ACAT1, ACAT2, ACAA1, ACAA2, and HADHB. Our present study showed that these five members were orthologous in six livestock species including buffalo and cattle. Transcriptomic data analyses derived from different lactations stages showed that displayed different expression patterns between buffalo and cattle. Immunohistochemistry staining revealed that ACAA1 were dominantly located in the mammary epithelial cells of these two dairy animals. Knockdown of inhibited mammary epithelial cell proliferation and triglyceride and β-casein secretion by regulating related gene expressions in cattle and buffalo. In contrast, overexpression promoted cell proliferation and triglyceride secretion. Finally, three novel SNPs (g.-681A>T, g.-23117C>T, and g.-24348G>T) were detected and showed significant association with milk production traits of Mediterranean buffaloes. In addition, g.-681A>T mutation located in the promoter region changed transcriptional activity significantly. Our findings suggested that play a key role in regulating buffalo and cattle milk synthesis and provided basic information to further understand the dairy animal lactation physiology.

Farag, M. M., H. B. El-Nassan, H. A. Merey, B. M. Eltanany, M. M. Galal, W. Wadie, D. M. El-Tanbouly, M. A. Khattab, L. A. Rashed, and A. N. ElMeshad, "Comparative pharmacodynamic study delineating the efficacy of amantadine loaded nano-emulsified organogel via intranasal versus transdermal route in rotenone-induced Parkinson ", Journal of Drug Delivery Science and Technology, vol. 86, pp. 104765, 2023.
Farag, M. M., H. B. El-Nassan, H. A. Merey, B. M. Eltanany, M. M. Galal, W. Wadie, D. M. El-Tanbouly, M. A. Khattab, L. A. Rashed, and A. N. ElMeshad, "Comparative pharmacodynamic study delineating the efficacy of amantadine loaded nano-emulsified organogel via intranasal versus transdermal route in rotenone-induced Parkinson …", Journal of Drug Delivery Science and Technology, vol. 86, 2023.
Farag, M. M., H. B. El-Nassan, H. A. Merey, B. M. Eltanany, M. M. Galal, W. Wadie, D. M. El-Tanbouly, M. A. Khattab, L. A. Rashed, and A. N. ElMeshad, "Comparative pharmacodynamic study delineating the efficacy of amantadine loaded nano-emulsified organogel via intranasal versus transdermal route in rotenone-induced Parkinson's disease rat model", Journal of Drug Delivery Science and Technology, vol. 86: Elsevier, pp. 104765, 2023. Abstract
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Farag, M., H. B. El-Nassan, H. A. Merey, B. M. Eltanany, M. M. Galal, W. Wadie, D. M. El-Tanbouly, M. A. Khattab, L. A. Rashed, and A. N. ElMeshad, "Comparative pharmacodynamic study delineating the efficacy of amantadine loaded nano-emulsified organogel via intranasal versus transdermal route in rotenone-induced Parkinson's disease rat model", Journal of Drug Delivery Science and Technology, vol. 86, pp. 104765, 2023.
Farag, M. M., H. B. El-Nassan, H. A. Merey, B. M. Eltanany, M. M. Galal, W. Wadie, D. M. El-Tanbouly, M. A. Khattab, L. A. Rashed, and A. N. ElMeshad, "Comparative pharmacodynamic study delineating the efficacy of amantadine loaded nano-emulsified organogel via intranasal versus transdermal route in rotenone-induced Parkinson’s disease rat model", Journal of Drug Delivery Science and Technology, vol. 86 , pp. 104765, 2023.
Farag, M. A., M. H. Baky, I. Morgan, M. R. Khalifa, R. Rennert, O. G. Mohamed, M. M. El-Sayed, A. Porzel, L. A. Wessjohann, and N. S. Ramadan, "Comparison of Balanites aegyptiaca parts: metabolome providing insights into plant health benefits and valorization purposes as analyzed using multiplex GC-MS, LC-MS, NMR-based metabolomics, and molecular networking", RSC advances, vol. 13, issue 31: Royal Society of Chemistry, pp. 21471-21493, 2023. Abstract
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Wang, M. X., B. Almasi, Z. A. B. Sinnah, H. S. Majdi, F. M. A. Altalbawy, D. Toghraie, I. Waleed, R. S. Zabibah, U. S. Altimari, and Y. X. Zhang, "A comprehensive laboratory measurement on the thermal characteristics of Ag–CuO–tungsten oxide/water nanofluid in mono, hybrid and ternary cases and presenting a new correlation", Journal of the Taiwan Institute of Chemical Engineers, vol. 143, pp. 104682, 2023.
Waly, D. A., A. H. A. Zeid, H. N. Attia, K. A. Ahmed, E. - S. A. El-Kashoury, A. M. El Halawany, and R. S. Mohammed, "Comprehensive phytochemical characterization of Persea americana Mill. fruit via UPLC/HR-ESI–MS/MS and anti-arthritic evaluation using adjuvant-induced arthritis model", Inflammopharmacology, vol. 31, issue 6: Springer International Publishing Cham, pp. 3243-3262, 2023. Abstract
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Wafi, A., M. S. Hosny, S. Patel, L. Biasi, A. saratzis, and H. Zayed, "Contemporary approaches for the management of aorto-iliac occlusive disease.", The Journal of cardiovascular surgery, vol. 64, issue 4, pp. 351-360, 2023. Abstract

Aortoiliac occlusive disease (AIOD) secondary to peripheral arterial disease remains a challenging condition to manage due to anatomical complexities and comorbidities. Operative morbidity and mortality rates are high, and best-practice guidelines have traditionally been limited by a paucity of good quality evidence to aid decision-making. The advent of endovascular technology has enabled the clinician in providing a less invasive option in patients unsuitable for open surgery, but durability of endovascular approaches has remained questionable. However, emerging data on the contemporary management of aortoiliac occlusive disease is demonstrating comparable success rates between open and endovascular surgery. The purpose of this review is to provide an overview on the evolution of techniques, the contemporary management, limitations in the body of evidence and future treatment adjuncts aimed at improving success of intervention in aortoiliac occlusive disease.

Ibrahim, K.;, H.; Hassan, K. T.; Wassif, and S.; Makady, "Context-Aware Expert for Software Architecture Recovery (CAESAR): An automated approach for recovering software architectures", Journal of King Saud University-Computer and Information Sciences, vol. 35, issue 8, 2023.
Ibrahim, K., H. Hassan, K. T. Wassif, and S. Makady, "Context-Aware Expert for Software Architecture Recovery (CAESAR): An automated approach for recovering software architectures", Journal of King Saud University - Computer and Information Sciences, vol. 35, issue 8, 2023.
Wolf, K., S. A. Ibrahim, S. Schneiderman, V. Riehl, S. Dambaeva, and K. Beaman, "Conventional natural killer cells control vascular remodeling in the uterus during pregnancy by acidifying the extracellular matrix with a2V.", Biology of reproduction, vol. 108, issue 1, pp. 121-132, 2023. Abstract

Vascular remodeling within the uterus immediately before and during early pregnancy increases blood flow in the fetus and prevents the development of gestational hypertension. Tissue-resident natural killer (trNK) cells secrete pro-angiogenic growth factors but are insufficient for uterine artery (UtA) remodeling in the absence of conventional natural killer (cNK) cells. Matrix metalloproteinase-9 (MMP9) is activated in acidic environments to promote UtA remodeling. We have previously shown that ATPase a2V plays a role in regulating the function of cNK cells during pregnancy. We studied the effect of a2V deletion on uterine cNK cell populations and pregnancy outcomes in VavCrea2Vfl/fl mice, where a2V is conditionally deleted in hematopoietic stem cells. Conventional NKcells were reduced but trNK cells were retained in implantation sites at gestational day 9.5, and UtA remodeling was inhibited despite no differences in concentrations of pro-angiogenic growth factors. The ratio of pro-MMP9 to total was significantly elevated in VavCrea2Vfl/fl mice, and MMP9 activity was significantly reduced. The pH of implantation sites was significantly elevated in VavCrea2Vfl/fl mice. We concluded that the role of cNK cells in the uterus is to acidify the extracellular matrix (ECM) using a2V, which activates MMP9 to degrade the ECM, release bound pro-angiogenic growth factors, and contribute to UtA remodeling. Our results are significant for the understanding of the development of gestational hypertension.

Hamdan, D. I., N. Tawfeek, R. A. El-Shiekh, H. M. A. Khalil, M. Y. Mahmoud, A. F. Bakr, D. Zaafar, N. Farrag, M. Wink, and A. M. El-Shazly, "Correction to: Salix subserrata Bark Extract-Loaded Chitosan Nanoparticles Attenuate Neurotoxicity Induced by Sodium Arsenate in Rats in Relation with HPLC-PDA-ESI-MS/MS Profle", AAPS PharmSciTech, vol. 24, no. 6, pp. 148, 2023. Abstract
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