Publications

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2022
Abdelsattar, A. S., A. Dawoud, S. Makky, R. Nofal, R. K. Aziz, and A. El-Shibiny, Bacteriophages: from isolation to application., , 2021, 2022. Abstract

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Tegally, H., J. E. San, M. Cotten, B. Tegomoh, G. Mboowa, D. P. Martin, C. Baxter, M. Moir, A. Lambisia, A. Diallo, et al., "The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance.", medRxiv: Cold Spring Harbor Laboratory Press, 2022. Abstract
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Rivera, D., A. I. Moreno-Switt, T. G. Denes, L. K. Hudson, T. L. Peters, R. Samir, R. K. Aziz, J. - P. Noben, J. Wagemans, and F. Dueñas, "Novel Salmonella Phage, vB\_Sen\_STGO-35-1, Characterization and Evaluation in Chicken Meat", Microorganisms, vol. 10, no. 3: Multidisciplinary Digital Publishing Institute, pp. 606, 2022. Abstract
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2021
Sallam, I. E., A. AbdelWareth, H. Attia, R. K. Aziz, M. N. Homsi, M. von Bergen, and M. A. Farag, Effect of Gut Microbiota Biotransformation on Dietary Tannins and Human Health Implications, , vol. 9, issue 5: Multidisciplinary Digital Publishing Institute, pp. 965, 2021. Abstract
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Elbanna, S. A., N. A. Moneib, R. K. Aziz, and R. Samir, Genomics-guided identification of a conserved CptBA-like toxin-antitoxin system in Acinetobacter baumannii, , vol. 30: Elsevier, pp. 159 - 170, 2021. Abstract
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Hemeda, A. A., A. Ahmad Mohamed, R. K. Aziz, M. S. Abdel-Hakeem, and M. Ali-Tammam, Impact of IL10, MTP, SOD2, and APOE Gene Polymorphisms on the Severity of Liver Fibrosis Induced by HCV Genotype 4, , vol. 13, issue 4: Multidisciplinary Digital Publishing Institute, pp. 714, 2021. Abstract
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Moustafa, A., R. S. Khalel, and R. K. Aziz, Traces of SARS-CoV-2 RNA in Peripheral Blood Cells of Patients with COVID-19, : Mary Ann Liebert, Inc., publishers 140 Huguenot Street, 3rd Floor New …, 2021. Abstract
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Soliman, M. S., M. Abdelfattah, S. M. N. Aman, L. M. Ibrahim, and R. K. Aziz, A gapless, unambiguous RNA metagenome-assembled genome sequence of a unique SARS-CoV-2 variant encoding spike S813I and ORF1a A859V substitutions, : Mary Ann Liebert, Inc., publishers, 2020, 2021. Abstract

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Krupovic, M., D. Turner, V. Morozova, M. Dyall-Smith, H. M. Oksanen, R. Edwards, B. E. Dutilh, S. M. Lehman, A. Reyes, D. P. Baquero, et al., "Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021", Archives of Virology, vol. 166, no. 11: Springer Vienna, pp. 3239–3244, 2021. Abstract
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Zahran, S. A., M. Ali-Tammam, A. E. Ali, and R. K. Aziz, "Compositional variation of the human fecal microbiome in relation to azo-reducing activity: a pilot study", Gut Pathogens, vol. 13, no. 1: BioMed Central, pp. 1–12, 2021. Abstract
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ElKenawy, N. M., N. H. Youssef, R. K. Aziz, M. A. Amin, and A. S. Yassin, "Draft genome sequence of a prodigiosin-hyperproducing Serratia marcescens strain isolated from Cairo, Egypt", G3, vol. 11, no. 10: Oxford University Press, pp. jkab284, 2021. Abstract
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Maina, A. N., F. B. Mwaura, M. Jumba, K. Kiefts, H. N. T. El-Din, and R. K. Aziz, "Novel PhoH-encoding vibriophages with lytic activity against environmental Vibrio strains", Archives of Microbiology, vol. 203, no. 9: Springer Berlin Heidelberg, pp. 5321–5331, 2021. Abstract
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2020
Nelson, J., A. O. El-Gendy, M. S. Mansy, M. A. Ramadan, and R. K. Aziz, The biosurfactants iturin, lichenysin and surfactin, from vaginally isolated lactobacilli, prevent biofilm formation by pathogenic Candida, , vol. 367, issue 15: Oxford University Press, pp. fnaa126, 2020. Abstract
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Mohamed, A. A., A. A. Hemeda, R. K. Aziz, M. S. Abdel-Hakeem, and M. Ali-Tammam, Body mass index (BMI) and alpha-fetoprotein (AFP) level correlate with the severity of HCV-induced fibrosis in a cohort of Egyptian patients with chronic HCV, , vol. 6, issue 1: Springer, pp. 1 - 8, 2020. Abstract
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Özdemir, V., Y. K. Arga, R. K. Aziz, M. Bayram, S. N. Conley, C. Dandara, L. Endrenyi, E. Fisher, C. K. Garvey, and N. Hekim, Digging Deeper into Precision/Personalized Medicine: Cracking the Sugar Code, the Third Alphabet of Life, and Sociomateriality of the Cell, , vol. 24, issue 2: Mary Ann Liebert, Inc., publishers 140 Huguenot Street, 3rd Floor New …, pp. 62 - 80, 2020. Abstract
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Soliman, M. S., N. S. Soliman, A. R. El-Manakhly, S. A. S. ElBanna, R. K. Aziz, and A. A. El-Kholy, Genomic Characterization of Methicillin-Resistant Staphylococcus aureus (MRSA) by High-Throughput Sequencing in a Tertiary Care Hospital, , vol. 11, issue 10: Multidisciplinary Digital Publishing Institute, pp. 1219, 2020. Abstract
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Attia, H., I. E. Sallam, A. AbdelWareth, A. Mira, R. A. Khattab, A. S. Yassin, M. A. Farag, and R. K. Aziz, Investigating Potential Chemoprotective Role of Pomegranate Juice Through Analyzing Its Reciprocal Interactions with the Gut Microbiota, : LIPPINCOTT WILLIAMS & WILKINS, TWO COMMERCE SQ, 2001 MARKET ST, PHILADELPHIA …, 2020. Abstract
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Davis, J. J., A. R. Wattam, R. K. Aziz, T. Brettin, R. Butler, R. M. Butler, P. Chlenski, N. Conrad, A. Dickerman, and E. M. Dietrich, The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities, , vol. 48, issue D1: Oxford University Press, pp. D606 - D612, 2020. Abstract
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Adriaenssens, E. M., M. B. Sullivan, P. Knezevic, L. J. van Zyl, B. L. Sarkar, B. E. Dutilh, P. Alfenas-Zerbini, M. Łobocka, Y. Tong, and J. R. Brister, Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee, : Springer, pp. 1 - 8, 2020. Abstract
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Abdelsalam, N. A., A. T. Ramadan, M. T. ElRakaiby, and R. K. Aziz, Toxicomicrobiomics: The Human Microbiome vs. Pharmaceutical, Dietary, and Environmental Xenobiotics, , vol. 11: Frontiers Media SA, 2020. Abstract
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Mohamed, A. A., A. A. Hemeda, R. K. Aziz, M. S. Abdel-Hakeem, and M. Ali-Tammam, "Body mass index (BMI) and alpha-fetoprotein (AFP) level correlate with the severity of HCV-induced fibrosis in a cohort of Egyptian patients with chronic HCV", Future Journal of Pharmaceutical Sciences, vol. 6, no. 1: Springer, pp. 1–8, 2020. Abstract
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KASHEF, M. O. N. A. T., and R. K. Aziz, "Drug Factory Microbiome: Top Three Actionable Challenges and Prospects", OMICS: A Journal of Integrative Biology, vol. 24, no. 1: Mary Ann Liebert, Inc., publishers 140 Huguenot Street, 3rd Floor New …, pp. 55–56, 2020. Abstract

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Aziz, R. K., M. R. Rizkallah, R. Saad, and M. T. Elrakaiby, "Translating pharmacomicrobiomics: Three actionable challenges/prospects in 2020", OMICS: A Journal of Integrative Biology, vol. 24, no. 2: Mary Ann Liebert, Inc., publishers 140 Huguenot Street, 3rd Floor New …, pp. 60–61, 2020. Abstract
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