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RA, E. - B., El Sherity SY, and A. MG., "Body composition changes in asthmatic children regarding steroid therapy duration", Egyptian Pharmaceutical Journal., vol. 19, pp. 18–24., 2020.
RA, R., F. MM, G. HI, and S. N, "1- T helper 17 and Tregs: a novel proposed mechanism for NB-UVB in vitiligo.", Exp Dermatol, vol. 23, issue 4, pp. 283-286, 2014.
RA, A., K. D, E. S. R, E. SM, S. GH, Y. SM, and H. RE, "• CD209-336A/G promotor polymorphism and its clinical associations in sickle cell disease Egyptian Pediatric patients", Hematol Oncol Stem Cell Ther , vol. 11, pp. 75– 81, 2018. cd209.pdf
RA, E. - A., H. F, A. - T. H, S. EM, A. - W. AH, A. H. A, S. M, E. - S. A, and A. - T. T., "Epigenetics and miRNA as predictive markers and targets for lung cancer chemotherapy.", Cancer Biol Ther., vol. 16, issue 7, pp. 1056-70, 2015.
RA, A., A. DK, and S. IA, "A localized case-control study of extra-gastric manifestations of Helicobacter pylori infection in children.", Indian J Pediatr., vol. 78, issue 10, pp. 1302, 2011.
Raad, I. I., A. - M. Chaftari, H. A. Torres, E. M. Ayoub, L. I. Narouz, J. Bartek, and R. Hachem, "Challenge of hepatitis C in Egypt and hepatitis B in Mauritania", World J Hepatol, vol. 10, issue 9, 2018. AbstractWebsite

Egypt has one of the highest prevalence rates of hepatitis C virus (HCV) in the world, mostly with genotype 4 that is highly associated with severe fibrosis. As a consequence, hepatocellular carcinoma has become the leading cause of cancer in this country. Mauritania is a highly endemic area for hepatitis B virus (HBV). HBV and HCV could both be iatrogenically transmitted through infected blood products, infected needles, and medical equipment improperly sterilized. Adequate and efficient healthcare and public health measures with good surveillance programs, access for screening, prevention strategies, and successful treatment are needed to halt the spread of these diseases. Herein, we have reviewed the epidemiology, modes of transmission, predisposing factors, and novel treatment modalities of these viruses. We have proposed practices and interventions to decrease the risk of transmission of HCV and HBV in the affected countries, including strict adherence to standard precautions in the healthcare setting, rigorous education and training of patients and healthcare providers, universal screening of blood donors, use of safety-engineered devices, proper sterilization of medical equipment, hepatitis B vaccination, as well as effective direct-acting antiviral agents for the treatment of HCV.

Raafat, M. A., A. K. Abou-Raya, E. R. M. ABOUT-HUSSEIN, and A. Darwish, "THE SUITABLE LEVEL FOR FEEDING DAIRY ANIMALS I- The Effect of Reducing the Maintenance Level for the Buffaloes and Local Cows", Proceedings of the Second Animal Production Conference, vol. 3, issue 3: J. Anim. Prod. UAR, pp. 217-231, 1963. Abstract
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Raafat, A., S. S. Tahoun, and N. M. Aboul Ela, "Palynology and palynofacies of the Middle Jurassic and Lower Cretaceous successions of northwest Egypt", Arabian Journal of Geosciences., vol. 14, pp. 2539, 2021.
Raafat, K. A., R. S. H. M. Allam, and B. M. Medhat, "OPTICAL COHERENCE TOMOGRAPHY ANGIOGRAPHY FINDINGS IN PATIENTS WITH NONOCULAR BEHÇET DISEASE.", Retina (Philadelphia, Pa.), 2018 Apr 23. Abstract

PURPOSE: To describe the optical coherence tomography angiography findings in nonocular Behçet disease.

METHODS: The superficial capillary plexus (SCP) and deep capillary plexus (DCP) and outer retinal and choroidal flow were evaluated using optical coherence tomography angiography. Perimetry was performed to correlate any microvascular and functional changes.

RESULTS: Capillary nonperfusion areas were found in the superficial capillary plexus in 16/20 eyes (80%) and in the DCP in 17/20 eyes (85%). Perifoveal capillary arcade disruption and vessel rarefaction were present in both plexuses in all cases. Capillary telangiectasia was present in the superficial capillary plexus in five eyes (25%) and in the DCP in all eyes. Telangiectasia of the parafoveal capillaries was present in the DCP in all eyes. The mean area of the foveal avascular zone was not significantly different from that in 20 normal eyes (P = 0.68). However, mean and central subfield capillary density values were significantly lower (P < 0.001 and P < 0.005, respectively) in the Behçet disease group. Perimetry revealed central scotomata on the pattern deviation plot in 12 eyes (60%).

CONCLUSION: Telangiectasia of the parafoveal capillaries was detected in the DCP in all cases. Microvascular changes in the superficial capillary plexus and DCP in nonocular Behçet disease can be detected by optical coherence tomography angiography.

Raafat, A., H. Khaled, N. Mokhtar, A. R. Zekri, and H. Gaballah, "Human papilloma virus infection and overexpression of p53 protein in bilharzial bladder cancer", Cancer Molecular Biology, vol. 7, no. 3, pp. 1481-1492, 2000. AbstractWebsite

An association between human papilloma virus (HPV) and bladder cancer has been reported. However, the role of HPV in bilharzial bladder cancer and its prevalence are not yet clarified. We investigated 50 cases for HPV types 16/18 by in situ hybridization (ISH). Also, p53 protein expression by immunohistochemistry was evaluated in 41 of these 50 cases, with correlation of these factors to clinicopathologic parameters and tumor relapse after primary treatment. HPV was detected in 46% of Egyptian bladder carcinomas (23/50 cases). Positivity was 47.8% for squamous cell carcinoma (SCC) and 36.4% for transitional cell carcinoma (TCC). There was a possible viral- bilharzial association as 52.8% of bilharzial cases, while only 12.5% of non bilharzial cases were HPV positive (p<0.05). P53 protein was found in 19/41cases (46.3%). Concordance between HPV and p53 was present in 58.5% of cases. Both factors studied were not related to tumor recurrence after primary treatment. So, HPV may be implicated in the aetiology of bilharzial bladder cancer, however a definite causal relationship remains unsolved. HPV together with p53 alterations might work in synergy to accelerate the carcinogenic process, as there was concordance in the results of both parameters in 24/41 cases (58.5%).

Raafat, A., S. S. Tahoun, and A. N. Ela, "Palynomorph biostratigraphy, palynofacies, thermal maturity and paleoenvironmental interpretation of the Bajocian-Aptian succession in the OBA D-8 Well, Matruh Basin, Egypt", Journal of African Earth Sciences, vol. 177, pp. Article # 104157, 2021.
Raafat, I. I., N. E. Guindy, R. M. H. Shahin, and L. A. Samy, "Toll-like receptor 7 gene single nucleotide polymorphisms and the risk for systemic lupus erythematosus: a case-control study", Zeitschrift fur Rheumatologie, vol. 1, pp. 1-5, 2017. tlr_7.pdf
Raafat, M., S. Mansour, R. Kamal, H. W. Ali, P. E. Shibel, A. Marey, S. N. Taha, and B. Alkalaawy, "Does artificial intelligence aid in the detection of different types of breast cancer?", Egyptian Journal of Radiology and Nuclear Medicine, vol. 53, issue 1, pp. 1-9, 2022. ai_and_different_breast_cancer.pdf
Raafat, M., M. El-Kalioubie, and Sahar Mahmoud Mansoura, "MRI and three dimensional ultrasonography in the assessment of pulmonary hypoplasia in fetuses with urinary tract anomalies", The Egyptian Journal of Radiology and Nuclear Medicine, vol. 47, pp. 1753-1764, 2016.
Raafat, A., S. Mowafy, S. M. Abouseri, M. A. Fouad, and N. A. Farag, "Lead generation of cysteine based mesenchymal epithelial transition (c-Met) kinase inhibitors: Using structure-based scaffold hopping, 3D-QSAR pharmacophore modeling, virtual screening, molecular docking, and molecular dynamics simulation.", Computers in biology and medicine, vol. 146, pp. 105526, 2022. Abstractasmaa-1.pdf

Cysteine-based mesenchymal-epithelial transition (c-Met) is a receptor tyrosine kinase that plays a definitive role during cancer progression and was identified as a possible target for anti-angiogenesis drugs. In the present study, different protocols of computer-based drug design were performed. Construction of predictive pharmacophore model using HypoGen algorithm resulted in a validated model of four features of positive ionizable, hydrogen bond acceptor, hydrophobic, and ring aromatic features with a correlation coefficient of 0.87, a configuration cost of 14.95, and a cost difference of 357.92. The model revealed a promising predictive power and had >90% probability of representing true correlation with the activity data. The model was established using Fisher's validation test at the 95% confidence level and test set prediction (r = 0.96), furthermore, the model was validated by mapping of set of compounds undergoing clinical trials as class Ⅱ c-met inhibitors. The generated valid pharmacophore model was then anticipated for virtual screening of three data bases. Moreover, scaffold hopping using replace fragments protocol was implemented. Hits generated were filtered according to Lipinski's rule; 510 selected hits were anatomized and subjected to molecular docking studies into the crystal structure of c-Met kinase. The good correlation between docking scores and ligand pharmacophore mapping fit values provided a reliable foundation for designing new potentially active candidates that may target c-Met kinase. Eventually, eight hits were selected as potential leads. Subsequently, seven (Hits) have displayed a higher dock score and demonstrated key residue interactions with stable molecular dynamics simulation. Therefore, these c-Met kinase inhibitors may further serve as new chemical spaces in designing new compounds.

Raafat, H., R. M., "A Tree Structured Neural Network for Document Analysis and Recognition, Proceedings of the 2nd International Conference on Document Analysis and Recognition, Oct. 20th- 22nd, 1993, pp 939-941, Tsukuba Science City, Japan.", Proceedings of the 2nd International Conference on Document Analysis and Recognition, Tsukuba Science City, Japan., pp. pp–939, 1993. Abstract
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Raafat, M., M. El-Kalioubie, and S. Mahmoud Mansour, "MRI and three dimensional ultrasonography in the assessment of pulmonary hypoplasia in fetuses with urinary tract anomalies.", The Egyptian Journal of Radiology and Nuclear Medicine, vol. Volume 47, issue Issue 4, pp. 1753-1764, 2016.
raafat, R., R. Dwedar, and E. El-Seidi, "evaluation of chrmogenic medium (cps) inthe isolation and identification of urinary tract pathogens", the egyptian journal of medical microbiology, vol. 24 no 2, issue 1110-2179, pp. 29-34, 2015. final_copy_chromogenic_media.doc
Raafat, A., S. Mowafy, S. M. Abouseri, M. A. Fouad, and N. A. Farag, "Lead generation of cysteine based mesenchymal epithelial transition (c-Met) kinase inhibitors: Using structure-based scaffold hopping, 3D-QSAR pharmacophore modeling, virtual screening, molecular docking, and molecular dynamics simulation.", Computers in biology and medicine, vol. 146, pp. 105526, 2022. Abstract

Cysteine-based mesenchymal-epithelial transition (c-Met) is a receptor tyrosine kinase that plays a definitive role during cancer progression and was identified as a possible target for anti-angiogenesis drugs. In the present study, different protocols of computer-based drug design were performed. Construction of predictive pharmacophore model using HypoGen algorithm resulted in a validated model of four features of positive ionizable, hydrogen bond acceptor, hydrophobic, and ring aromatic features with a correlation coefficient of 0.87, a configuration cost of 14.95, and a cost difference of 357.92. The model revealed a promising predictive power and had >90% probability of representing true correlation with the activity data. The model was established using Fisher's validation test at the 95% confidence level and test set prediction (r = 0.96), furthermore, the model was validated by mapping of set of compounds undergoing clinical trials as class Ⅱ c-met inhibitors. The generated valid pharmacophore model was then anticipated for virtual screening of three data bases. Moreover, scaffold hopping using replace fragments protocol was implemented. Hits generated were filtered according to Lipinski's rule; 510 selected hits were anatomized and subjected to molecular docking studies into the crystal structure of c-Met kinase. The good correlation between docking scores and ligand pharmacophore mapping fit values provided a reliable foundation for designing new potentially active candidates that may target c-Met kinase. Eventually, eight hits were selected as potential leads. Subsequently, seven (Hits) have displayed a higher dock score and demonstrated key residue interactions with stable molecular dynamics simulation. Therefore, these c-Met kinase inhibitors may further serve as new chemical spaces in designing new compounds.

Raafat, M. A., A. Ghoneim, I. M. Elgindi, E. R. M. Abou-Hussein, and E. A. Gihad, "Effect of interseeding barley with berseem on its yield, chemical composition and nutritive value.", Journal of Animal Production of the United Arab Republic, vol. 3, pp. 117-122, 1963. Abstract
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Raafat, M., M. El-Kalioubie, and S. Mahmoud Mansour, "MRI and three dimensional ultrasonography in the assessment of pulmonary hypoplasia in fetuses with urinary tract anomalies", Egyptian Journal of Radiology and Nuclear Medicine , vol. 47, issue 47, pp. 1753–1764, 2016. mr_fetal_for_sc.pdf
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