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2021
Qiao, L., L. Xu, L. Yu, J. Wynn, R. Hernan, X. Zhou, C. Farkouh-Karoleski, U. S. Krishnan, J. Khlevner, A. De, et al., Rare and de novo variants in 827 congenital diaphragmatic hernia probands implicate LONP1 as candidate risk gene, , vol. 108, issue 10, pp. 1964 - 1980, 2021. AbstractWebsite

SummaryCongenital diaphragmatic hernia (CDH) is a severe congenital anomaly that is often accompanied by other anomalies. Although the role of genetics in the pathogenesis of CDH has been established, only a small number of disease-associated genes have been identified. To further investigate the genetics of CDH, we analyzed de novo coding variants in 827 proband-parent trios and confirmed an overall significant enrichment of damaging de novo variants, especially in constrained genes. We identified LONP1 (lon peptidase 1, mitochondrial) and ALYREF (Aly/REF export factor) as candidate CDH-associated genes on the basis of de novo variants at a false discovery rate below 0.05. We also performed ultra-rare variant association analyses in 748 affected individuals and 11,220 ancestry-matched population control individuals and identified LONP1 as a risk gene contributing to CDH through both de novo and ultra-rare inherited largely heterozygous variants clustered in the core of the domains and segregating with CDH in affected familial individuals. Approximately 3% of our CDH cohort who are heterozygous with ultra-rare predicted damaging variants in LONP1 have a range of clinical phenotypes, including other anomalies in some individuals and higher mortality and requirement for extracorporeal membrane oxygenation. Mice with lung epithelium-specific deletion of Lonp1 die immediately after birth, most likely because of the observed severe reduction of lung growth, a known contributor to the high mortality in humans. Our findings of both de novo and inherited rare variants in the same gene may have implications in the design and analysis for other genetic studies of congenital anomalies.

Qari, S. H., A. M. Abdulmajeed, T. S. Alnusaire, and M. H. Soliman, "Responses of Crop Plants Under Nanoparticles Supply in Alleviating Biotic and Abiotic Stresses", Sustainable Agriculture Reviews 53, vol. 53, Cham, Springer International Publishing, pp. 231 - 246, 2021. Abstract
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Treppo, E., L. Quartuccio, G. Ragab, and S. De Vita, "Rheumatologic manifestations of Hepatitis C Virus", Minerva Medica, vol. 112, issue 2: Edizioni Minerva Medica, pp. 201 - 214, 2021. AbstractWebsite
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Mistry, S., T. Ali, M. Qasheesh, R. A. Beg, M. A. Shaphe, F. Ahmad, F. Z. Kashoo, and A. S. Shalaby, "Assessment of hand function in women with lymphadenopathy after radical mastectomy", PeerJ, vol. 9, pp. e11252, 2021.
Mistry, S., T. Ali, M. Qasheesh, R. A. Beg, M. A. Shaphe, F. Ahmad, F. Z. Kashoo, and A. S. Shalaby, "Assessment of hand function in women with lymphadenopathy after radical mastectomy", PeerJ, vol. 9, pp. e11252, 2021.
Mokhtar, A., H. He, K. Alsafadi, S. Mohammed, O. O. Ayantobo, A. Elbeltagi, O. M. M. Abdelwahab, H. Zhao, Y. Quan, H. G. Abdo, et al., "Assessment of the effects of Spatiotemporal Characteristics of Drought on Crop Yields in Southwest China", International Journal of Climatology: Elsevier, pp. 1–20, 2021. Abstract

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Hendawy, O., H. A. M. Gomaa, S. Hussein, S. I. Alzarea, S. Qasim, F. E. - Z. A. S. Rahman, A. T. Ali, and S. R. Ahmed, "Cold-pressed raspberry seeds oil ameliorates high-fat diet triggered non-alcoholic fatty liver disease", Saudi Pharmaceutical Journal, vol. 29, issue 11, pp. 1303-1313, 2021. article_no._5.pdf
Paquette, I., D. Rosman, R. El Sayed, T. Hull, E. Kocjancic, L. Quiroz, S. Palmer, A. Shobeiri, M. Weinstein, G. Khatri, et al., "Consensus Definitions and Interpretation Templates for Fluoroscopic Imaging of Defecatory Pelvic Floor Disorders : Proceedings of the Consensus Meeting of the Pelvic Floor Consortium of the American Society of Colon and Rectal Surgeons", Techniques in coloproctology, vol. 25, issue 1, pp. 3-17, 2021.
Paquette, I., D. Rosman, R. El Sayed, T. Hull, E. Kocjancic, L. Quiroz, S. L. Palmer, A. Shobeiri, M. Weinstein, G. Khatri, et al., "Consensus Definitions and Interpretation Templates for Fluoroscopic Imaging of Defecatory Pelvic Floor Disorders: Proceedings of the Consensus Meeting of the Pelvic Floor Consortium of the American Society of Colon and Rectal Surgeons", Diseases of the colon and rectum, vol. 64, issue 1, pp. 31-44, 2021.
Gurland, B. H., G. Khatri, R. Ram, T. L. Hull, E. Kocjancic, L. H. Quiroz, R. F. El Sayed, K. R. Jambhekar, V. Chernyak, R. M. Paspulati, et al., "Consensus definitions and interpretation templates for magnetic resonance imaging of Defecatory pelvic floor disorders : Proceedings of the consensus meeting of the pelvic floor disorders consortium of the American Society of Colon and Rectal Surgeons,", International urogynecology journal, vol. 32, issue 10, pp. 2561-2574, 2021.
Gurland, B. H., G. Khatri, R. Ram, T. L. Hull, E. Kocjancic, L. H. Quiroz, R. F. El Sayed, K. R. Jambhekar, V. Chernyak, R. M. Paspulati, et al., "Consensus Definitions and Interpretation Templates for Magnetic Resonance Imaging of Defecatory Pelvic Floor Disorders: Proceedings of the Consensus Meeting of the Pelvic Floor Disorders Consortium of the American Society of Colon and Rectal Surgeons", Female pelvic medicine & reconstructive surgery, vol. 27, issue 10, pp. e645-e656, 2021.
Gurland, B. H., G. Khatri, R. Ram, T. L. Hull, E. Kocjancic, L. H. Quiroz, R. E. F. Sayed, K. R. Jambhekar, V. Chernyak, R. M. Paspulati, et al., "Consensus Definitions and Interpretation Templates for Magnetic Resonance Imaging of Defecatory Pelvic Floor Disorders: Proceedings of the Consensus Meeting of the Pelvic Floor Disorders Consortium of the American Society of Colon and Rectal Surgeons,.", AJR. American journal of roentgenology, vol. 217, issue 4, pp. 800-812, 2021. Abstract

The Pelvic Floor Disorders Consortium (PFDC) is a multidisciplinary organization of colorectal surgeons, urogynecologists, urologists, gynecologists, gastroenterologists, radiologists, physiotherapists, and other advanced care practitioners. Specialists from these fields are all dedicated to the diagnosis and management of patients with pelvic floor conditions, but they approach, evaluate, and treat such patients with their own unique perspectives given the differences in their respective training. The PFDC was formed to bridge gaps and enable collaboration between these specialties. The goal of the PFDC is to develop and evaluate educational programs, create clinical guidelines and algorithms, and promote high quality of care in this unique patient population. The recommendations included in this article represent the work of the PFDC Working Group on Magnetic Resonance Imaging of Pelvic Floor Disorders (members listed alphabetically in Table 1). The objective was to generate inclusive, rather than prescriptive, guidance for all practitioners, irrespective of discipline, involved in the evaluation and treatment of patients with pelvic floor disorders.

Gurland, B. H., G. Khatri, R. Ram, T. L. Hull, E. Kocjancic, L. H. Quiroz, R. F. El Sayed, K. R. Jambhekar, V. Chernyak, R. M. Paspulati, et al., "Consensus Definitions and Interpretation Templates for Magnetic Resonance Imaging of Defecatory Pelvic Floor Disorders: Proceedings of the Consensus Meeting of the Pelvic Floor Disorders Consortium of the American Society of Colon and Rectal Surgeons.", Diseases of the colon and rectum, vol. 64, issue 10, pp. 1184-1197, 2021.
Paquette, I., D. Rosman, R. F. El Sayed, T. Hull, E. Kocjancic, L. Quiroz, S. L. Palmer, A. Shobeiri, M. Weinstein, G. Khatri, et al., "Correction to: Consensus Definitions and Interpretation Templates for Fluoroscopic Imaging of Defecatory Pelvic Floor Disorders : Proceedings of the Consensus Meeting of the Pelvic Floor Consortium of the American Society of Colon and Rectal Surgeons", Techniques in coloproctology, vol. 25, issue 8, pp. 995-996, 2021.
Chopra, H., P. S. Dey, D. Das, T. Bhattacharya, M. Shah, S. Mubin, S. P. Maishu, R. Akter, M. H. Rahman, C. Karthika, et al., "Curcumin Nanoparticles as Promising Therapeutic Agents for Drug Targets.", Molecules (Basel, Switzerland), vol. 26, issue 16, 2021. Abstract

is very well-known medicinal plant not only in the Asian hemisphere but also known across the globe for its therapeutic and medicinal benefits. The active moiety of is curcumin and has gained importance in various treatments of various disorders such as antibacterial, antiprotozoal, cancer, obesity, diabetics and wound healing applications. Several techniques had been exploited as reported by researchers for increasing the therapeutic potential and its pharmacological activity. Here, the dictum is the new room for the development of physicochemical, as well as biological, studies for the efficacy in target specificity. Here, we discussed nanoformulation techniques, which lend support to upgrade the characters to the curcumin such as enhancing bioavailability, increasing solubility, modifying metabolisms, and target specificity, prolonged circulation, enhanced permeation. Our manuscript tried to seek the attention of the researcher by framing some solutions of some existing troubleshoots of this bioactive component for enhanced applications and making the formulations feasible at an industrial production scale. This manuscript focuses on recent inventions as well, which can further be implemented at the community level.

Kumon, K., S. M. Afify, G. Hassan, S. Ueno, S. Monzur, H. M. Nawara, H. A. A. Quora, M. Sheta, Y. Xu, X. Fu, et al., "Differentiation of cancer stem cells into erythroblasts in the presence of CoCl.", Scientific reports, vol. 11, issue 1, pp. 23977, 2021. Abstract

Cancer stem cells (CSCs) are subpopulations in the malignant tumors that show self-renewal and multilineage differentiation into tumor microenvironment components that drive tumor growth and heterogeneity. In previous studies, our group succeeded in producing a CSC model by treating mouse induced pluripotent stem cells. In the current study, we investigated the potential of CSC differentiation into blood cells under chemical hypoxic conditions using CoCl. CSCs and miPS-LLCcm cells were cultured for 1 to 7 days in the presence of CoCl, and the expression of VEGFR1/2, Runx1, c-kit, CD31, CD34, and TER-119 was assessed by RT-qPCR, Western blotting and flow cytometry together with Wright-Giemsa staining and immunocytochemistry. CoCl induced significant accumulation of HIF-1α changing the morphology of miPS-LLCcm cells while the morphological change was apparently not related to differentiation. The expression of VEGFR2 and CD31 was suppressed while Runx1 expression was upregulated. The population with hematopoietic markers CD34 and c-kit was immunologically detected in the presence of CoCl. Additionally, high expression of CD34 and, a marker for erythroblasts, TER-119, was observed. Therefore, CSCs were suggested to differentiate into erythroblasts and erythrocytes under hypoxia. This differentiation potential of CSCs could provide new insight into the tumor microenvironment elucidating tumor heterogenicity.

Sepidarkish, M., G. Rezamand, M. Qorbani, H. Heydari, D. M. Estêvão, D. Omran, M. Morvaridzadeh, D. M. Roffe, F. Farsi, S. Ebrahimi, et al., "Effect of omega-3 fatty acids supplementation on adipokines: a systematic review and meta-analysis of randomized controlled trials", Crit Rev Food Sci Nutr . 2021 May 17;1-15, pp. 1-15, 2021.
Salman, M. A., M. G. Qassem, M. S. Aboul-Enein, M. A. Ameen, A. Abdallah, H. Omar, A. M. Hussein, M. S. Tourky, K. Monazea, A. M. Hassan, et al., "Effect of preoperative diet regimen on liver size before laparoscopic sleeve gastrectomy in morbidly obese patients.", Surgical endoscopy, 2021. Abstract

BACKGROUND: Low caloric diet can reduce liver volume; however, there is no consensus regarding preoperative weight reduction before bariatric surgery. This study evaluates the effect of preoperative very-lowcalorie diet (VLCD) in patients undergoing laparoscopic sleeve gastrectomy (LSG).

METHODS: This prospective study included patients scheduled for LSG stratified into two groups, Diet Group (n = 183) who followed a preoperative VLCD regimen for three weeks and underwent assessment of the liver lobes span before and after regimen, and Control Group (n = 138) who underwent sonographic assessment once before surgery and were operated upon without diet. The outcome measures were the impact of preoperative diet on the liver span, intraoperative complications, anthropometric factors affecting the liver span.

RESULTS: Diet regimen resulted in a significant reduction of the right and left lobes. The percentage of the reduction of the left lobe span was significantly higher than that of the right lobe (p < 0.001). Change of the size of the two lobes was correlated positively with weight and body mass index and initial size of both lobes. There was no significant difference between the two groups in the frequency of operative complications.

CONCLUSION: VLCD for three weeks before bariatric surgery effectively reduced liver size. The reduction is more in the left lobe. The changes of both lobes were correlated well with the pre- and post-regimen weight and BMI. It was also positively correlated with the initial size of both lobes.

Glasbey, J. C., D. Nepogodiev, J. F. F. Simoes, O. Omar, E. Li, M. L. Venn, PGDME, M. K. Abou Chaar, V. Capizzi, D. Chaudhry, et al., "Elective Cancer Surgery in COVID-19–Free Surgical Pathways During the SARS-CoV-2 Pandemic: An International, Multicenter, Comparative Cohort Study", Journal of Clinical Oncology, vol. 39, no. 1, pp. 66-78, 2021. AbstractWebsite

PURPOSEAs cancer surgery restarts after the first COVID-19 wave, health care providers urgently require data to determine where elective surgery is best performed. This study aimed to determine whether COVID-19–free surgical pathways were associated with lower postoperative pulmonary complication rates compared with hospitals with no defined pathway.PATIENTS AND METHODSThis international, multicenter cohort study included patients who underwent elective surgery for 10 solid cancer types without preoperative suspicion of SARS-CoV-2. Participating hospitals included patients from local emergence of SARS-CoV-2 until April 19, 2020. At the time of surgery, hospitals were defined as having a COVID-19–free surgical pathway (complete segregation of the operating theater, critical care, and inpatient ward areas) or no defined pathway (incomplete or no segregation, areas shared with patients with COVID-19). The primary outcome was 30-day postoperative pulmonary complications (pneumonia, acute respiratory distress syndrome, unexpected ventilation).RESULTSOf 9,171 patients from 447 hospitals in 55 countries, 2,481 were operated on in COVID-19–free surgical pathways. Patients who underwent surgery within COVID-19–free surgical pathways were younger with fewer comorbidities than those in hospitals with no defined pathway but with similar proportions of major surgery. After adjustment, pulmonary complication rates were lower with COVID-19–free surgical pathways (2.2% v 4.9%; adjusted odds ratio [aOR], 0.62; 95% CI, 0.44 to 0.86). This was consistent in sensitivity analyses for low-risk patients (American Society of Anesthesiologists grade 1/2), propensity score–matched models, and patients with negative SARS-CoV-2 preoperative tests. The postoperative SARS-CoV-2 infection rate was also lower in COVID-19–free surgical pathways (2.1% v 3.6%; aOR, 0.53; 95% CI, 0.36 to 0.76).CONCLUSIONWithin available resources, dedicated COVID-19–free surgical pathways should be established to provide safe elective cancer surgery during current and before future SARS-CoV-2 outbreaks.

Ahmed, M. A. E. - G. E. - S., Y. Yang, Y. Yang, B. Yan, G. Chen, R. M. Hassan, L. - L. Zhong, Y. Chen, A. P. Roberts, Y. Wu, et al., "Emergence of Hypervirulent Carbapenem-Resistant Klebsiella pneumoniae Coharboring a -Carrying Virulent Plasmid and a -Carrying Plasmid in an Egyptian Hospital.", mSphere, vol. 6, issue 3, 2021. Abstract

The emergence of carbapenem-resistant (CRKP) isolates in Egyptian hospitals has been reported. However, the genetic basis and analysis of the plasmids associated with carbapenem-resistant hypervirulent (CR-HvKP) in Egypt have not been presented. Therefore, we attempted to decipher the plasmid sequences that are responsible for transferring the determinants of carbapenem resistance, particularly and Out of 34 isolates collected from two tertiary hospitals in Egypt, 31 were CRKP. Whole-genome sequencing revealed that our isolates were related to 13 different sequence types (STs). The most prevalent ST was ST101, followed by ST383 and ST11. Among the CRKP isolates, one isolate named EBSI036 has been reassessed by Nanopore sequencing. Genetic environment analysis showed that EBSI036 carried 20 antibiotic resistance genes and was identified as a CR-HvKP strain: it harbored four plasmids, namely, pEBSI036-1-NDM-VIR, pEBSI036-2-KPC, pEBSI036-3, and pEBSI036-4. The two carbapenemase genes and were located on plasmids pEBSI036-1-NDM-VIR and pEBSI036-2-KPC, respectively. The IncFIB:IncHI1B hybrid plasmid pEBSI036-1-NDM-VIR also carried some virulence factors, including the regulator of the mucoid phenotype (), the regulator of mucoid phenotype 2 (), and aerobactin ( and ). Thus, we set out in this study to analyze in depth the genetic basis of the pEBSI036-1-NDM-VIR and pEBSI036-2-KPC plasmids. We report a high-risk clone ST11 KL47 serotype of a CR-HvKP strain isolated from the blood of a 60-year-old hospitalized female patient from the intensive care unit (ICU) in a tertiary care hospital in Egypt, which showed the cohabitation of a novel hybrid plasmid coharboring the and virulence genes and a -carrying plasmid. CRKP has been registered in the critical priority tier by the World Health Organization and has become a significant menace to public health. The emergence of CR-HvKP is of great concern in terms of both disease and treatment. In-depth analysis of the carbapenemase-encoding and virulence plasmids may provide insight into ongoing recombination and evolution of virulence and multidrug resistance in Thus, this study serves to alert contagious disease clinicians to the presence of hypervirulence in CRKP isolates in Egyptian hospitals.

Alnusair, G. S. H., Y. S. A. Mazrou, S. H. Qari, A. A. Elkelish, M. H. Soliman, M. Eweis, K. Abdelaal, G. A. El-Samad, M. F. M. Ibrahim, and N. ElNahhas, "Exogenous Nitric Oxide Reinforces Photosynthetic Efficiency, Osmolyte, Mineral Uptake, Antioxidant, Expression of Stress-Responsive Genes and Ameliorates the Effects of Salinity Stress in Wheat", plants, vol. 10, pp. 1693, 2021. plants-10-01693_1.pdf
Farghali, R. A., M. Qasim, G. B. M. Kibria, and M. R. Abonazel, "Generalized two-parameter estimators in the multinomial logit regression model: methods, simulation and application", Communications in Statistics - Simulation and Computation: Taylor & Francis, pp. 1-16, 2021. AbstractWebsite

AbstractIn this article, we propose generalized two-parameter (GTP) estimators and an algorithm for the estimation of shrinkage parameters to combat multicollinearity in the multinomial logit regression model. In addition, the mean squared error properties of the estimators are derived. A simulation study is conducted to investigate the performance of proposed estimators for different sample sizes, degrees of multicollinearity, and the number of explanatory variables. Swedish football league dataset is analyzed to show the benefits of the GTP estimators over the traditional maximum likelihood estimator (MLE). The empirical results of this article revealed that GTP estimators have a smaller mean squared error than the MLE and can be recommended for practitioners.

Abdel Hameed, R., M. Al Elaimi, M. T. Qureshi, A. El-Kader, A. Nassar, M. Aljohani, and E. I. Arafa, "Green Recycling of Poly (ethylene terephthalate) Waste as Corrosion Inhibitor for Steel in Marine Environment", Egyptian Journal of Chemistry, vol. 64, issue 5: National Information and Documentation Centre (NIDOC), Academy of Scientific …, pp. 2685-2695, 2021. Abstract
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YAMANY, A. B. E. E. R. S., F. Abdel-Ghaffar, S. A. Quraishy, O. Al-Amri, H. Mehlhorn, and R. Abdel-Gaber, "Histological technique to detect the physiological age of the malaria vector mosquito Anopheles pharoensis (Diptera: Culicidae)", Microscopy Research and Technique, vol. 85, issue (4), pp. 1580–1587, 2021.
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