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Pavulraj, S., M. Kamel, H. Stephanowitz, F. Liu, J. Plendl, N. Osterrieder, and W. Azab, "Equine Herpesvirus Type 1 Modulates Cytokine and Chemokine Profiles of Mononuclear Cells for Efficient Dissemination to Target Organs.", Viruses, vol. 12, issue 9, 2020. Abstract

Equine herpesvirus type 1 (EHV-1) causes encephalomyelopathy and abortion, for which cell-associated viremia and subsequent virus transfer to and replication in endothelial cells (EC) are responsible and prerequisites. Viral and cellular molecules responsible for efficient cell-to-cell spread of EHV-1 between peripheral blood mononuclear cells (PBMC) and EC remain unclear. We have generated EHV-1 mutants lacking , , and genes, either individually or in combination. Mutant viruses were analyzed for their replication properties in cultured equine dermal cells, PBMC infection efficiency, virus-induced changes in the PBMC proteome, and cytokine and chemokine expression profiles. , , and are not essential for virus replication, but deletion resulted in a significant reduction in plaque size. Deletion of and gene significantly reduced cell-to-cell virus transfer from virus-infected PBMC to EC. EHV-1 infection of PBMC resulted in upregulation of several pathways such as Ras signaling, oxidative phosphorylation, platelet activation and leukocyte transendothelial migration. In contrast, chemokine signaling, RNA degradation and apoptotic pathways were downregulated. Deletion of , and modulated chemokine signaling and MAPK pathways in infected PBMC, which may explain the impairment of virus spread between PBMC and EC. The proteomic results were further confirmed by chemokine assays, which showed that virus infection dramatically reduced the cytokine/chemokine release in infected PBMC. This study uncovers cellular proteins and pathways influenced by EHV-1 after PBMC infection and provide an important resource for EHV-1 pathogenesis. EHV-1-immunomodulatory genes could be potential targets for the development of live attenuated vaccines or therapeutics against virus infection.

Pavulraj, S., M. Kamel, H. Stephanowitz, F. Liu, J. Plendl, N. Osterrieder, and W. Azab, "Equine Herpesvirus Type 1 Modulates Cytokine and Chemokine Profiles of Mononuclear Cells for Efficient Dissemination to Target Organs", Viruses, vol. 12, issue 9, 2020. AbstractWebsite
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Pavlenko, V., K. S. H, S. Z. ˙ o´łtowska, A. B. Haruna, M. Zahid, Z. Mansurov, Z. Supiyeva, A. Galal, K. I. Ozoemena, Q. Abbas, et al., "A comprehensive review of template-assisted porous carbons: Modern preparation methods and advanced applications", Materials Science & Engineering R, vol. 149, pp. 100682, 2022.
Pavitt, H. L., Y. Aydinok, A. El-Beshlawy, S. Bayraktaroglu, A. S. Ibrahim, M. M. Hamdy, W. Pang, C. Sharples, and T. G. St Pierre, "The effect of reducing repetition time TR on the measurement of liver R2 for the purpose of measuring liver iron concentration.", Magnetic resonance in medicine, vol. 65, issue 5, pp. 1346-51, 2011 May. Abstract

The effects of reducing the pulse repetition time from 2500 ms to 1000 ms when using spin-density-projection-assisted R2-magnetic resonance imaging for the purpose of measuring liver iron concentration were evaluated. Repeated liver R2 measurements were made using both protocols on 60 subjects with liver iron concentrations ranging from 0.5 to 48.6 mg Fe (g dry tissue)(-1). The mean total scan time at repetition time 1000 ms was 42% of that at repetition time 2500 ms. The repeatability coefficients for the two protocols were not significantly different from each other. A systematic difference in the measured R2 using each protocol was found indicating that an adjustment factor is required when one protocol is used to replace the other. The 95% limits of agreement between the two protocols were not significantly different from their repeatability coefficients indicating that the protocols can be interchanged without any significant change in accuracy or precision of liver iron concentration measurement.

Pavitt, H. L., Y. Aydinok, A. El-Beshlawy, S. Bayraktaroglu, A. S. Ibrahim, M. M. Hamdy, W. Pang, C. Sharples, and T. G. St Pierre, "The effect of reducing repetition time TR on the measurement of liver R2 for the purpose of measuring liver iron concentration.", Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine, vol. 65, issue 5, pp. 1346-51, 2011 May. Abstract

The effects of reducing the pulse repetition time from 2500 ms to 1000 ms when using spin-density-projection-assisted R2-magnetic resonance imaging for the purpose of measuring liver iron concentration were evaluated. Repeated liver R2 measurements were made using both protocols on 60 subjects with liver iron concentrations ranging from 0.5 to 48.6 mg Fe (g dry tissue)(-1). The mean total scan time at repetition time 1000 ms was 42% of that at repetition time 2500 ms. The repeatability coefficients for the two protocols were not significantly different from each other. A systematic difference in the measured R2 using each protocol was found indicating that an adjustment factor is required when one protocol is used to replace the other. The 95% limits of agreement between the two protocols were not significantly different from their repeatability coefficients indicating that the protocols can be interchanged without any significant change in accuracy or precision of liver iron concentration measurement.

Pavania K. C., Baron E. E., Faheem M. S., Chaveiro A., and M. D. S. and F., "Optimisation of total RNA extraction from bovine oocytes and embryos for gene expression studies and effects of cryoprotectants on total RNA extraction", Cytology and Genetics, vol. Vol. 49, , issue 4, pp. 232–239, 2015.
Paul, A. K., M. M. Rahman, M. M. Rahman, M. S. Islam, K. Bork, G. Witzke, J. H. Tidwell, G. Allan, R. C. Summerfelt, R. D. Clayton, et al., "Fatty acid concentration, proximate composition and mineral composition in fishbone flour of Nile Tilapia.", Journal of Fisheries and Aquatic Science, vol. 13, no. 1: orgz, pp. 40–59, 1974. Abstract
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Patton, M. Q., Qualitative {Evaluation} and {Research} {Methods}, , 2nd, Newbury Park, CA, Sage Publications, 1990. Abstract

heuristic research, ethnomethodology and symbolic interactionism are approaches derived from phenomenology

Patton, M. Q., How to use qualitative methods in evaluation, , Newbury Park, CA, Sage Publications, 1987. Abstract
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Patton, M. Q., Utilization-{Focused} {Evaluation}, , 2nd, Beverly Hills, California, Sage Publications, 1986. Abstract
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Patrick, P., Impact of {SOA} on enterprise information architectures, : ACM, pp. 844 – 848, jun, 2005. Abstract

Enterprises are looking to find new and cost effective means to leverage existing investments in IT infrastructure and incorporate new capabilities in order to improve business productivity. As a means to improve the integration of applications hosted both internal and external to the enterprise, enterprises are turning to Service Oriented Architectures.In this paper, we describe some of the major aspects associated with the introduction of a Service Oriented Architecture and the impact that it can have on an enterprise's information architecture. We outline the concept of exposing data sources as services and discuss the critical integration aspects that need to be addressed including data access, data transformation, and integration into an over arching enterprise security scheme. The paper suggests alternatives, utilizing a Service Oriented Architecture approach, to promote flexible, extensible, and evolvable information architectures.

Patrick, D. A., M. A. Ismail, R. K. Arafa, T. Wenzler, X. Zhu, T. Pandharkar, S. K. Jones, K. A. Werbovetz, R. Brun, D. W. Boykin, et al., "Synthesis and antiprotozoal activity of dicationic m-terphenyl and 1,3-dipyridylbenzene derivatives.", Journal of medicinal chemistry, vol. 56, issue 13, pp. 5473-94, 2013 Jul 11. Abstract

4,4″-Diamidino-m-terphenyl (1) and 36 analogues were prepared and assayed in vitro against T rypanosoma brucei rhodesiense , Trypanosoma cruzi , Plasmodium falciparum , and Leishmania amazonensis . Twenty-three compounds were highly active against T. b. rhodesiense or P. falciparum. Most noteworthy were amidines 1, 10, and 11 with IC50 of 4 nM against T. b. rhodesiense, and dimethyltetrahydropyrimidinyl analogues 4 and 9 with IC50 values of ≤ 3 nM against P. falciparum. Bis-pyridylimidamide derivative 31 was 25 times more potent than benznidazole against T. cruzi and slightly more potent than amphotericin B against L. amazonensis. Terphenyldiamidine 1 and dipyridylbenzene analogues 23 and 25 each cured 4/4 mice infected with T. b. rhodesiense STIB900 with four daily 5 mg/kg intraperitoneal doses, as well as with single doses of ≤ 10 mg/kg. Derivatives 5 and 28 (prodrugs of 1 and 25) each cured 3/4 mice with four daily 25 mg/kg oral doses.

Patonay, G., G. Chapman, M. Henary, and W. Abdelwahab, "Copolymerized fluorescent silica nanoparticles for labels and molecular recognition", 252nd ACS National Meeting & Exposition, Philadelphia, PA, United States, pp. ANYL-241, 2016. Abstract
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Patonay, G., M. Henary, W. Abdelwahab, and G. Chapman, "Applications of Copolymerized Silica Nanoparticles", SCIX2016, Reno, NV, United States, 2016. Abstract
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Patonay, G., G. Chapman, M. M. Henary, and W. Abdelwahab, "Fluorescent multidye copolymerized silica nanoparticles for bioanalytical applications (Conference Presentation)", Reporters, Markers, Dyes, Nanoparticles, and Molecular Probes for Biomedical Applications X, vol. 10508: International Society for Optics and Photonics, pp. 105080B, 2018. Abstract
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Patonay, G., W. Abdelwahab, and M. Salim, "Separation and identification of forced degradation products of pharmaceuticals using simple analytical techniques", 252nd ACS National Meeting & Exposition, Philadelphia, PA, United States, pp. ANYL-193, 2016. Abstract
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Patil, D., R. Gupta, D. P. Sethi, M. Ezzat, T. ElGhazaly, M. Gheith, A. Ibrahim, T. ElGhazaly, M. Gheith, I. Robindro, et al., EFFECTIVE & PERSONALIZD WEB USAGE MINING BASED ON CLIENT DATA, , 2013. Abstract
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of in of Patients, I. G. D. N. A. M. T. O. C. C., "Impact of Global DNA Methylation in Treatment Outcome of Colorectal Cancer Patients", Frontiers in Pharmacology, vol. 9, pp. 1173, 2018.
Paterson, A., S. Maswime, A. Hardy, R. M. Pearse, and B. M. Biccard, Postoperative outcomes associated with surgical care for women in Africa: an international risk-adjusted analysis of prospective observational cohorts, , vol. 4, pp. 100100, 2022. AbstractWebsite

BackgroundImproving women's health is a critical component of the sustainable development goals. Although obstetric outcomes in Africa have received significant focus, non-obstetric surgical outcomes for women in Africa remain under-examined.
Methods
We did a secondary analysis of the African Surgical Outcomes Study (ASOS) and International Surgical Outcomes Study (ISOS), two 7-day prospective observational cohort studies of outcomes after adult inpatient surgery. This sub-study focuses specifically on the analysis of the female, elective, non-obstetric, non-gynaecological surgical data collected during these two large multicentre studies. The African data from both cohorts are compared with international (non-African) outcomes in a risk-adjusted logistic regression analysis using a generalised linear mixed-effects model. The primary outcome was severe postoperative complications including in-hospital mortality in Africa compared with non-African outcomes.
Results
A total of 1698 African participants and 18 449 international participants met the inclusion criteria. The African cohort were younger than the international cohort with a lower preoperative risk profile. Severe complications occurred in 48 (2.9%) of 1671, and 431 (2.3%) of 18 449 patients in the African and international cohorts, respectively, with in-hospital mortality after severe complications of 23/48 (47.9%) in Africa and 78/431 (18.1%) internationally. Women in Africa had an adjusted odds ratio of 2.06 (95% confidence interval, 1.17–3.62; P=0.012) of developing a severe postoperative complication after elective non-obstetric, non-gynaecological surgery, compared with the international cohort.
Conclusions
Women in Africa have double the risk adjusted odds of severe postoperative complications (including in-hospital mortality) after elective non-obstetric, non-gynaecological surgery compared with the international incidence.

Paterson, A., S. Maswime, A. Hardy, R. M. Pearse, and B. M. Biccard, Postoperative outcomes associated with surgical care for women in Africa: an international risk-adjusted analysis of prospective observational cohorts, , vol. 4, pp. 100100, 2022. AbstractWebsite

BackgroundImproving women's health is a critical component of the sustainable development goals. Although obstetric outcomes in Africa have received significant focus, non-obstetric surgical outcomes for women in Africa remain under-examined.
Methods
We did a secondary analysis of the African Surgical Outcomes Study (ASOS) and International Surgical Outcomes Study (ISOS), two 7-day prospective observational cohort studies of outcomes after adult inpatient surgery. This sub-study focuses specifically on the analysis of the female, elective, non-obstetric, non-gynaecological surgical data collected during these two large multicentre studies. The African data from both cohorts are compared with international (non-African) outcomes in a risk-adjusted logistic regression analysis using a generalised linear mixed-effects model. The primary outcome was severe postoperative complications including in-hospital mortality in Africa compared with non-African outcomes.
Results
A total of 1698 African participants and 18 449 international participants met the inclusion criteria. The African cohort were younger than the international cohort with a lower preoperative risk profile. Severe complications occurred in 48 (2.9%) of 1671, and 431 (2.3%) of 18 449 patients in the African and international cohorts, respectively, with in-hospital mortality after severe complications of 23/48 (47.9%) in Africa and 78/431 (18.1%) internationally. Women in Africa had an adjusted odds ratio of 2.06 (95% confidence interval, 1.17–3.62; P=0.012) of developing a severe postoperative complication after elective non-obstetric, non-gynaecological surgery, compared with the international cohort.
Conclusions
Women in Africa have double the risk adjusted odds of severe postoperative complications (including in-hospital mortality) after elective non-obstetric, non-gynaecological surgery compared with the international incidence.

Patel-Hett, S., E. J. Martin, B. M. Mohammed, S. Rakhe, M. Nolte, J. Kuhn, C. J. Barrett, D. D. Pittman, D. Brophy, and J. E. Murphy, Pf-06741086, a monoclonal antibody with Tissue Factor Pathway Inhibitor (tfpi) neutralizing activity, improves coagulation parameters in global hemostatic assays in hemophilic whole blood and plasma, , vol. 22, pp. 79, 2016. Abstract
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Patel, S. N. D. H., S. S. Ibrahim, M. A. Yehia, and G. K. Hargrave, "Investigation of premixed turbulent combustion in a semi-confined explosion chamber", Experimental Thermal and Fluid Science, vol. 27, no. 4: Elsevier, pp. 355–361, 2003. Abstractabstract_paper_2003.docx

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Patel, M. N., A. Aboumohamed, and A. Hemal, "Does transition from the da Vinci Si to Xi robotic platform impact single-docking technique for robot-assisted laparoscopic nephroureterectomy?", BJU international, vol. 116, issue 6, pp. 990-4, 2015 Dec. Abstract

OBJECTIVES: To describe our robot-assisted nephroureterectomy (RNU) technique for benign indications and RNU with en bloc excision of bladder cuff (BCE) and lymphadenectomy (LND) for malignant indications using the da Vinci Si and da Vinci Xi robotic platform, with its pros and cons. The port placement described for Si can be used for standard and S robotic systems. This is the first report in the literature on the use of the da Vinci Xi robotic platform for RNU.

PATIENTS AND METHODS: After a substantial experience of RNU using different da Vinci robots from the standard to the Si platform in a single-docking fashion for benign and malignant conditions, we started using the newly released da Vinci Xi robot since 2014. The most important differences are in port placement and effective use of the features of da Vinci Xi robot while performing simultaneous upper and lower tract surgery. Patient positioning, port placement, step-by-step technique of single docking RNU-LND-BCE using the da Vinci Si and da Vinci Xi robot are shown in an accompanying video with the goal that centres using either robotic system benefit from the hints and tips. The first segment of video describes RNU-LND-BCE using the da Vinci Si followed by the da Vinci Xi to highlight differences. There was no need for patient repositioning or robot re-docking with the new da Vinci Xi robotic platform.

RESULTS: We have experience of using different robotic systems for single docking RNU in 70 cases for benign (15) and malignant (55) conditions. The da Vinci Xi robotic platform helps operating room personnel in its easy movement, allows easier patient side-docking with the help of its boom feature, in addition to easy and swift movements of the robotic arms. The patient clearance feature can be used to avoid collision with the robotic arms or the patient's body. In patients with challenging body habitus and in situations where bladder cuff management is difficult, modifications can be made through reassigning the camera to a different port with utilisation of the retargeting feature of the da Vinci Xi when working on the bladder cuff or in the pelvis. The vision of the camera used for da Vinci Xi was initially felt to be inferior to that of the da Vinci Si; however, with a subsequent software upgrade this was much improved. The base of the da Vinci Xi is bigger, which does not slide and occasionally requires a change in table placement/operating room setup, and requires side-docking especially when dealing with very tall and obese patients for pelvic surgery.

CONCLUSIONS: RNU alone or with LND-BCE is a challenging surgical procedure that addresses the upper and lower urinary tract simultaneously. Single docking and single robotic port placement for RNU-LND-BCE has evolved with the development of different generations of the robotic system. These procedures can be performed safely and effectively using the da Vinci S, Si or Xi robotic platform. The new da Vinci Xi robotic platform is more user-friendly, has easy installation, and is intuitive for surgeons using its features.

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