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Akçakaya, M., T. A. Basha, R. H. Chan, H. Rayatzadeh, K. V. Kissinger, B. Goddu, L. A. Goepfert, W. J. Manning, and R. Nezafat, "Accelerated contrast-enhanced whole-heart coronary MRI using low-dimensional-structure self-learning and thresholding", Magnetic resonance in medicine, vol. 67, no. 5: Wiley Subscription Services, Inc., A Wiley Company, pp. 1434–1443, 2012. Abstract
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Akçakaya, M., T. A. Basha, R. H. Chan, H. Rayatzadeh, K. V. Kissinger, B. Goddu, L. A. Goepfert, W. J. Manning, and R. Nezafat, "Accelerated contrast-enhanced whole-heart coronary MRI using low-dimensional-structure self-learning and thresholding", Magnetic resonance in medicine, vol. 67, no. 5: Wiley Subscription Services, Inc., A Wiley Company, pp. 1434–1443, 2012. Abstract
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Akçakaya, M., T. A. Basha, R. H. Chan, H. Rayatzadeh, K. V. Kissinger, B. Goddu, L. A. Goepfert, W. J. Manning, and R. Nezafat, "Accelerated contrast-enhanced whole-heart coronary MRI using low-dimensional-structure self-learning and thresholding", Magnetic resonance in medicine, vol. 67, no. 5: Wiley Subscription Services, Inc., A Wiley Company Hoboken, pp. 1434–1443, 2012. Abstract
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Kwak, Y., S. Nam, M. Akçakaya, T. A. Basha, B. Goddu, W. J. Manning, V. Tarokh, and R. Nezafat, "Accelerated aortic flow assessment with compressed sensing with and without use of the sparsity of the complex difference image", Magnetic resonance in medicine, vol. 70, issue 3, pp. 851-858, 2013. Abstract
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Kwak, Y., S. Nam, M. Akçakaya, T. A. Basha, B. Goddu, W. J. Manning, V. Tarokh, and R. Nezafat, "Accelerated aortic flow assessment with compressed sensing with and without use of the sparsity of the complex difference image", Magnetic resonance in medicine, vol. 70, no. 3, pp. 851–858, 2013. Abstract
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Basha, T. A., K. V. Kissinger, B. Goddu, S. Berg, and R. Nezafat, "Accelerated 4D flow imaging using randomly undersampled echo planer imaging with compressed-sensing reconstruction", Journal of Cardiovascular Magnetic Resonance, vol. 16, issue 1: BioMed Central, pp. 1, 2014. Abstract
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Basha, T. A., K. V. Kissinger, B. Goddu, S. Berg, and R. Nezafat, "Accelerated 4D flow imaging using randomly undersampled echo planer imaging with compressed-sensing reconstruction", Journal of Cardiovascular Magnetic Resonance, vol. 16, no. 1: BioMed Central, pp. W18, 2014. Abstract
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Wenz, F., Y. Abo-Madyan, G. Welzel, and F. A. Giordano, "ABVD vs. radiotherapy in early stage Hodgkin’s lymphoma", Strahlentherapie und Onkologie, vol. 188, no. 8: Urban & Vogel, pp. 649, 2012. Abstract
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Gault, L. M., R. A. Lenz, C. W. Ritchie, A. Meier, A. A. Othman, Q. Tang, S. Berry, Y. Pritchett, and W. Z. Robieson, "ABT-126 monotherapy in mild-to-moderate Alzheimer's dementia: randomized double-blind, placebo and active controlled adaptive trial and open-label extension.", Alzheimer's research & therapy, vol. 8, issue 1, pp. 44, 2016 Oct 18. AbstractWebsite

BACKGROUND: Results from a phase 2a study indicated that treatment with the novel α7 nicotinic acetylcholine receptor agonist ABT-126 25 mg once daily (QD) was associated with a trend for improvement in cognition in subjects with mild-to-moderate Alzheimer's dementia (AD). A phase 2b program was designed to evaluate a broader dose range of ABT-126 as monotherapy in subjects with mild-to-moderate AD. The program consisted of a double-blind, placebo and active controlled study of ABT-126 (dose range 25-75 mg) and an open-label extension study (75 mg).

METHODS: The randomized double-blind study enrolled 438 subjects (Mini-Mental Status Examination score of 10-24, inclusive) not currently taking acetylcholinesterase inhibitors or memantine. Subjects received 24 weeks of ABT-126 25 mg QD (n = 77), ABT-126 50 mg QD (n = 108), ABT-126 75 mg QD (n = 73), donepezil 10 mg QD (n = 76), or placebo (n = 104). The primary endpoint was the change from baseline to week 24 in the 11-item Alzheimer's Disease Assessment Scale-Cognitive subscale (ADAS-Cog) total score. Subjects completing the double-blind study could enroll in the 28-week open-label extension study. Adverse events (AEs) and other safety parameters were monitored in both studies.

RESULTS: A total of 367 patients (83.8 %) completed the double-blind study and 349 (79.7 %) entered the open-label study. Compared with placebo, donepezil significantly improved ADAS-Cog 11-item total scores from baseline to week 24 (-2.29 ± 0.95; one-sided P = 0.008). No ABT-126 dose demonstrated a statistically significant improvement vs placebo at week 24 in the ADAS-Cog total score: ABT-126 25 mg, -0.47 ± 0.94 (P = 0.309); ABT-126 50 mg, -0.87 ± 0.85 (P = 0.153); and ABT-126 75 mg, -1.08 ± 0.94 (P = 0.127). Rates of serious AEs and discontinuations due to AEs were similar across treatment groups. The most frequently reported AEs in both studies were constipation, fall, and headache. No clinically meaningful changes were observed in other parameters.

CONCLUSIONS: In the double-blind trial, donepezil significantly improved ADAS-Cog scores but no statistically significant improvement was seen with any ABT-126 dose. ABT-126 had an acceptable safety profile in subjects with mild-to-moderate AD in both studies.

TRIAL REGISTRATION: ClinicalTrials.gov NCT01527916 , Registered 3 February 2012 (randomized trial). ClinicalTrials.gov NCT01676935 . Registered 29 August 2012 (open-label extension study).

Grant, D. A., E. Teng, R. O. Serpa, M. L. Prins, A. V. Ulyanova, P. F. Koch, M. R. Grovola, J. P. Harris, D. K. Cullen, and J. A. Wolf, "Abstracts from The 32nd Annual National Neurotrauma Symposium June 29–July 2, 2014 San Francisco, California", Journal of Neurotrauma, vol. 31, issue 12: Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801 USA, pp. A-1-A-126, 2014. Abstract
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Grant, D. A., E. Teng, R. O. Serpa, M. L. Prins, A. V. Ulyanova, P. F. Koch, M. R. Grovola, J. P. Harris, D. K. Cullen, and J. A. Wolf, Abstracts from The 32nd Annual National Neurotrauma Symposium June 29–July 2, 2014 San Francisco, California, , vol. 31, issue 12: Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801 USA, pp. A - 1, 2014. Abstract
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Honeybul, S., K. Ho, C. R. P. Lind, G. R. Gillett, J. P. Dreier, A. Demertzi, A. Soddu, F. Gomez, L. Heine, and C. di Perri, "Abstracts from The 11th Symposium of the International Neurotrauma Society March 19–23, 2014 Budapest, Hungary", Journal of Neurotrauma, vol. 31, issue 5: Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801 USA, pp. A-1-A-73, 2014. Abstract
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Honeybul, S., K. Ho, C. R. P. Lind, G. R. Gillett, J. P. Dreier, A. Demertzi, A. Soddu, F. Gomez, L. Heine, and C. di Perri, Abstracts from The 11th Symposium of the International Neurotrauma Society March 19–23, 2014 Budapest, Hungary, , vol. 31, issue 5: Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801 USA, pp. A - 1, 2014. Abstract
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El-Zawawy, M. A., "Abstraction Analysis and Certified Flow and Context Sensitive Points-to Relation for Distributed Programs", 12th International Conference Computational Science and Its Applications, ICCSA 2012, Salvador de Bahia, Brazil, June 18-21, 2012, Proceedings, Part IV, ICCSA (4), Lecture Notes in Computer Science, vol. 7336: Springer, pp. 83-99, 2012. AbstractAbstraction Analysis and Certified Flow and Context Sensitive Points-to Relation for Distributed Programs.pdf

This paper presents a new technique for pointer analysis of distributed programs executed on parallel machines with hierarchical memories. One motivation for this research is the languages whose global address space is partitioned. Examples of these languages are Fortress, X10, Titanium, Co-Array Fortran, UPC, and Chapel. These languages allow programmers to adjust threads and data layout and to write to and read from memories of other threads. The techniques presented in this paper have the form of type systems which are simply structured. The proposed technique is shown on a language which is the while langauge enriched with basic commands for pointer manipulations and also enriched with commands vital for distributed execution of programs. An abstraction analysis that for a given statement calculates the set of function abstractions that the statement may evaluate-to is introduced in this paper. The abstraction analysis is needed in the proposed pointer analysis. The mathematical soundness of all techniques presented in this paper are discussed. The soundness is proved against a new operational semantics presented in this paper. Our work has two advantages over related work. In our technique, each analysis result is associated with a correctness proof in the form of type derivation. The hierarchical memory model used in this paper is in line with the hierarchical character of concurrent parallel computers.

Kassem, L., L. Fattet, J. Lopez, G. Thibault, E. Lavergne, S. Chabaud, N. Carrabin, N. Chopin, T. Bachelot, and G. Gillet, Abstract P4-11-24: TIF1 [gamma] interacts with the TGFβ1/SMAD4 signaling leading to poorer outcome in operable breast cancer, : American Association for Cancer Research, 2015. Abstract
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Rivera, S., C. Vens, P. Maingon, A. S. Govaerts, E. Shash, D. Lacombe, W. Grant, and V. Grégoire, "Abstract C220: Combining novel targeted therapies and radiotherapy: A challenge to overcome.", Molecular Cancer Therapeutics, vol. 12, no. 11 Supplement: AACR, pp. C220–C220, 2013. Abstract
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Kato, S., S. Roujol, F. Delling, S. Akhtari, J. Jang, T. Basha, S. Berg, K. Kissinger, B. Goddu, and W. Manning, "Abstract 14783", Circulation, vol. 132, issue Suppl_3, pp. A14783, 2015. Abstract
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Mansour, W. Y., N. V. Bogdanova, U. Kasten-Pisula, T. Rieckmann, S. Köcher, K. Borgmann, M. Baumann, M. Krause, C. Petersen, H. Hu, et al., "Aberrant overexpression of miR-421 downregulates ATM and leads to a pronounced DSB repair defect and clinical hypersensitivity in SKX squamous cell carcinoma.", Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology, vol. 106, issue 1, pp. 147-54, 2013 Jan. Abstract

BACKGROUND: Cellular and clinical sensitivity to ionizing radiation (IR) is determined by DNA double-strand breaks (DSB) repair. Here, we investigate the molecular mechanism underlying the extreme response of a head and neck tumor case (SKX) to standard radiotherapy.

METHODS: Immunofluorescence (IF) was used for the assessment of DSB repair, Western blot and real-time PCR for protein and mRNA expression, respectively.

RESULTS: SKX cells exhibited a pronounced radiosensitivity associated with numerous residual γ-H2AX foci after IR. This was not associated with lacking canonical repair proteins. SKX cells did not express any ATM protein. Accordingly, immunoblotting revealed no ATM kinase activity toward substrates such as p-SMC1, p-CHK2 and p-KAP1. Sequencing of all 66 exons of ATM showed no mutation. ATM mRNA level was moderately reduced, which could be reverted by 5'-Aza-C treatment but without restoring protein levels. Importantly, we demonstrated a post-transcriptional regulation in SKX cells via 6-fold enhanced levels of miR-421, which targets the 3'-UTR of ATM mRNA. Transfection of SKX cells with either anti-miR-421 inhibitor or a microRNA-insensitive ATM vector recovered ATM expression and abrogated the hyper-radiosensitivity.

CONCLUSION: This is the first report describing microRNA-mediated down-regulation of ATM leading to clinically manifest tumor radiosensitivity.

Mansour, W. Y., N. V. Bogdanova, U. Kasten-Pisula, T. Rieckmann, S. Kocher, K. Borgmann, M. Baumann, M. Krause, C. Petersen, H. Hu, et al., "Aberrant overexpression of miR-421 downregulates ATM and leads to a pronounced DSB repair defect and clinical hypersensitivity in SKX squamous cell carcinoma", Radiother Oncol, 2012/12/04, vol. 106, no. 1, pp. 147-54, Jan, 2013. Abstractmansour_2013.pdfWebsite

BACKGROUND: Cellular and clinical sensitivity to ionizing radiation (IR) is determined by DNA double-strand breaks (DSB) repair. Here, we investigate the molecular mechanism underlying the extreme response of a head and neck tumor case (SKX) to standard radiotherapy. METHODS: Immunofluorescence (IF) was used for the assessment of DSB repair, Western blot and real-time PCR for protein and mRNA expression, respectively. RESULTS: SKX cells exhibited a pronounced radiosensitivity associated with numerous residual gamma-H2AX foci after IR. This was not associated with lacking canonical repair proteins. SKX cells did not express any ATM protein. Accordingly, immunoblotting revealed no ATM kinase activity toward substrates such as p-SMC1, p-CHK2 and p-KAP1. Sequencing of all 66 exons of ATM showed no mutation. ATM mRNA level was moderately reduced, which could be reverted by 5'-Aza-C treatment but without restoring protein levels. Importantly, we demonstrated a post-transcriptional regulation in SKX cells via 6-fold enhanced levels of miR-421, which targets the 3'-UTR of ATM mRNA. Transfection of SKX cells with either anti-miR-421 inhibitor or a microRNA-insensitive ATM vector recovered ATM expression and abrogated the hyper-radiosensitivity. CONCLUSION: This is the first report describing microRNA-mediated down-regulation of ATM leading to clinically manifest tumor radiosensitivity.

Petit, J. Y., M. Rietjens, C. Garusi, A. Giraldo, F. De Lorenzi, P. Rey, E. C. Millen, B. P. da Silva, R. Bosco, and O. Youssef, "Abdominal complications and sequelae after breast reconstruction with pedicled TRAM flap: is there still an indication for pedicled TRAM in the year 2003?", Plastic and reconstructive surgery, vol. 112, no. 4: LWW, pp. 1063–1065, 2003. Abstract
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Elfishawi, M. M., B. R. Sakr, M. H. El-Arousy, A. K. Hatw, A. N. AbdulKarim, A. B. Tammam, A. N. Kotp, M. E. Hamed, I. E. Genedy, and E. D. El Desouky, AB1031 Rheumatoid Arthritis, A Single-Center Egyptian Experience, : BMJ Publishing Group Ltd, 2016. Abstract
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Gomaa, M. M., Hussain S. A., E. - D. E. A., Bayoumi, and M. M. Gobashy, "A.C. Electrical properties of kaolinite under pressure- pseudo random network modeling", 63th Conference and technical exhibition of the European Association of Geoscientists and Engineers (EAGE), Session P054, Amsterdam, The Netherlands. , 2001.