Alfaar, A. S., M. S. Bakry, M. Kamal, S. Ezzat, I. Zaky, H. Taha, A. Ismail, and S. Abouelnaga,
"Accelerating Innovation in Outcomes and Quality of Care Research Through Integration of Clinical Databases; Pediatric Oncology Experience in Egypt",
American Society of Clinical Oncology, Chicago, ASCO - JCO, 2014.
AbstractBackground: Children’s Cancer Hospital -Egypt was established to serve as the country major referral center. Within 6 years the hospital has received 13,865 patients with cancer among 19,744 screened ones. With this rapidly growing number the hospital looked for developing a reliable method for examining the quality of care and supporting health services research as an emerging field in the country. The aim of this paper is to describe the role of integrating several databases in providing a 360 view for healthcare picture. Methods: We have developed an online cancer registry database using RedCap data capture system to gather patients data from different sources. This database was integrated with the electronic medical records to share new patients data instantaneously. Two nurses were trained to curate the database daily and act as human quality control gateway. Cancer registry provided data about 19,927 patients were examined between 2007 and 2013. The second aspect was provided by digitizing and Optical Character Recognition of 12,573 pathology paper-based reports. Pathology reports were analysed electronically to extract dates, initial and final diagnoses, gross and microscopic pictures and markers used for diagnosis. A third aspect was added to the model by mining Radiology Information System database to extract 258,632 studies for all patients. Radiological studies were organized to show the type of investigation, time needed and outcome. Results: A unified comprehensive new database was developed showing uncountable number of quality of care indices and correlations between different initial and final timepoints. Those indicators included delay of diagnosis, reporting and difference in outcomes correlated with epidemiological aspects. The time used to develop this database was two weeks in the first time. A standard operating procedures was developed to decrease time during future updates. Conclusions: Accelerated pathway to research can be acquired in any settings including unprivileged low-middle income countries via structured reporting, integration between different databases and using simple information technology skills.
Alfaar, A. S., R. Nour, M. Kamal, S. Ezzat, and M. S. Bakry,
"Automating clinical protocol monitoring: a model from developing countries.",
European Multidisciplinary Cancer Congress, Amsterdam, Elsevier, 2013.
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Alfaar, A. S., M. S. Bakry, and S. Ezzat,
"Childhood Orbital, Ocular and Optic nerve tumors in Egypt ",
ARVO Annual Meeting 2014, Orlando, Florida, 2014.
AbstractPurpose: Our aim is to study the incidence of different ocular, orbital and optic nerve tumors in childhood age group (between 0-18 years old) in the largest Egyptian pediatric oncology referral center and correlate the features of each disease and its survival outcomes.
Methods: Institutional cancer registry database was reviewed for patients who presented with orbital tumors as a primary site of involvement between July 2007 and November 2013. REDCap (Research Electronic Data Capture) system was used for data collection and organization. Integration between clinical information system and RedCap was established for real-time registry updating. Relevant ICD-O-3 topography codes were used to identify the sites. Data were presented in terms of frequencies and percentages. Other demographic properties were presented. Survival was demonstrated using kaplan-meier curves.
Results: Among 7277 patients presented with different childhood tumors 425 had the mentioned lesions. Males were affected more than females. Retinoblastoma, Astrocytomas of optic nerve and Rhabdomyosarcoma of orbit were the most frequent tumors. Mean age of retinoblastoma cases was 1.4 years while it was higher in other diseases except germ cell tumors. We've presented correlations of our findings with the current Egyptian population-based cancer registry and previous results from Cancer in five continents report. Overall Survival of Retinoblastoma was 95.4% while it was better in Germ cell tumors and less in all other tumor categories. Orbital bones masses were hard to identify due to the broad classification in current ICD-O topography coding.
Conclusions: Childhood orbital tumors distribution was similar to international publications except increased incidence of orbital lymphomas. Special attention should be paid to updating the ICD-O classification system to present different skull bones
Bakry, M. S., M. Kamal, S. Ezzat, and A. S. AlFaar,
"Integrating Web-based Real-time Analysis System with Clinical Research Database Facilitates Interim Analysis.",
European Multidisciplinary Cancer Congress, Stockholm, ElSevier., pp. p. 2.163, 2011.
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