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Abdelkader, A. A., M. S. Khalil, and M. S. M. Mohamed, "Simultaneous biodegradation of λ-cyhalothrin pesticide and Vicia faba growth promotion under greenhouse conditions", AMB Express, vol. 12, issue 1, 2022. Abstract

λ-cyhalothrin is a widely used synthetic pyrethroid insecticide and its persistence in plant, soil and water exerts a detrimental effect on humans as well as the environment. There are many studies regarding isolated bacteria capable of degrading λ-cyhalothrin in vitro. However, limited work has been done examining the microbial degradation of λ-cyhalothrin together with plant growth promotion under greenhouse conditions. In this study, 43 bacterial strains were isolated from heavily polluted soil with λ-cyhalothrin by the enrichment technique. The plant growth promotion characteristics of all isolates were evaluated. The results revealed that five isolates were potential in λ-cyhalothrin biodegradation at high concentration (1200 mg/L) within only 24 h together with their high plant growth promotion abilities. The morphological, biochemical and 16S rDNA sequence analyses identified the isolates as Bacillus subtilis strains. The GC/MS analysis revealed that the selected isolates reached high levels of degradation after only two days, the degradation percentage ranged from 95.72 to 99.52% after 48 h of incubation. Furthermore, the degradation pathway for complete detoxification and metabolism of λ-cyhalothrin was established. Moreover, greenhouse experiment was conducted, the results indicate that the application of seed coat significantly enhanced Vicia faba seedling growth and caused an increase from 38.4 to 40.2% percentage of fresh and dry weight, respectively compared to untreated control. All isolates were effective to remove the pesticide residues in Vicia faba seedlings and recorded the highest degradation percentage of 83.79 under greenhouse conditions. Therefore, it can be concluded that the Bacillus subtilis strains isolated in this study have a dual potential role in complete mineralization of λ-cyhalothrin residues in vivo as well as effective biofertilization for future use in sustainable agriculture. © 2022, The Author(s).

Abdelmohsen, G., G. T. M. Dawoud, and M. S. M. Mohamed, "Investigation of the biochemical and ultrastructural mechanisms underlying the antimicrobial activity of Mimusops spp. extracts", Baghdad Science Journal, vol. 17, no. 2, pp. 452-462, 2020. AbstractWebsite
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Abdelmoneim, T. K., M. S. M. Mohamed, I. A. Abdelhamid, S. F. M. Wahdan, and M. A. M. Atia, "Development of rapid and precise approach for quantification of bacterial taxa correlated with soil health", Frontiers in Microbiology, vol. 13, 2023. Abstract

The structure and dynamic of soil bacterial community play a crucial role in soil health and plant productivity. However, there is a gap in studying the un−/or reclaimed soil bacteriome and its impact on future plant performance. The 16S metagenomic analysis is expensive and utilize sophisticated pipelines, making it unfavorable for researchers. Here, we aim to perform (1) in silico and in vitro validation of taxon-specific qPCR primer-panel in the detection of the beneficial soil bacterial community, to ensure its specificity and precision, and (2) multidimensional analysis of three soils/locations in Egypt (‘Q’, ‘B’, and ‘G’ soils) in terms of their physicochemical properties, bacteriome composition, and wheat productivity as a model crop. The in silico results disclosed that almost all tested primers showed high specificity and precision toward the target taxa. Among 17 measured soil properties, the electrical conductivity (EC) value (up to 5 dS/m) of ‘Q’ soil provided an efficient indicator for soil health among the tested soils. The 16S NGS analysis showed that the soil bacteriome significantly drives future plant performance, especially the abundance of Proteobacteria and Actinobacteria as key indicators. The functional prediction analysis results disclosed a high percentage of N-fixing bacterial taxa in ‘Q’ soil compared to other soils, which reflects their positive impact on wheat productivity. The taxon-specific qPCR primer-panel results revealed a precise quantification of the targeted taxa compared to the 16S NGS analysis. Moreover, 12 agro-morphological parameters were determined for grown wheat plants, and their results showed a high yield in the ‘Q’ soil compared to other soils; this could be attributed to the increased abundance of Proteobacteria and Actinobacteria, high enrichment in nutrients (N and K), or increased EC/nutrient availability. Ultimately, the potential use of a taxon-specific qPCR primer-panel as an alternative approach to NGS provides a cheaper, user-friendly setup with high accuracy. Copyright © 2023 Abdelmoneim, Mohamed, Abdelhamid, Wahdan and Atia.

Al Kashgry, N. A. T., H. H. Abulreesh, I. A. El-Sheikh, Y. A. Almaroai, R. Salem, I. Mohamed, F. R. Waly, G. Osman, and M. S. M. Mohamed, Utilization of a recombinant defensin from Maize (Zea mays L.) as a potential antimicrobial peptide, , vol. 10, issue 1, pp. 208, 2020. AbstractWebsite

The search for effective and bioactive antimicrobial molecules to  encounter the medical need for new antibiotics is an encouraging area of research. Plant defensins are small cationic, cysteine-rich peptides with a stabilized tertiary structure by disulfide-bridges and characterized by a wide range of biological functions. The heterologous expression of Egyptian maize defensin (MzDef) in Escherichia coli and subsequent purification by glutathione affinity chromatography yielded 2 mg/L of recombinant defensin peptide. The glutathione-S-transferase (GST)-tagged MzDef of approximately 30 kDa in size (26 KDa GST +  ~ 4 KDa MzDef peptide) was immunodetected with anti-GST antibodies. The GST-tag was successfully cleaved from the MzDef peptide by thrombin, and the removal was validated by the Tris-Tricine gel electrophoresis. The MzDef induced strong growth inhibition of Rhizoctonia solani, Fusarium verticillioides, and Aspergillus niger by 94.23%, 93.34%, and 86.25%, respectively, whereas relatively weak growth inhibitory activity of 35.42% against Fusarium solani was recorded. Moreover, strong antibacterial activities were demonstrated against E. coli and Bacillus cereus and the moderate activities against Salmonella enterica and Staphylococcus aureus at all tested concentrations (0.1, 0.2, 0.4, 0.8, 1.6, and 3.2 µM). Furthermore, the in vitro MTT assay exhibited promising anticancer activity against all tested cell lines (hepatocellular carcinoma, mammary gland breast cancer, and colorectal carcinoma colon cancer) with IC50 values ranging from 14.85 to 29.85 µg/mL. These results suggest that the recombinant peptide MzDef may serve as a potential alternative antimicrobial and anticancer agent to be used in medicinal application.

Almuhayawi, M. S., M. S. M. Mohamed, M. Abdel-Mawgoud, S. Selim, S. K. Al Jaouni, and H. Abdelgawad, "Bioactive potential of several actinobacteria isolated from microbiologically barely explored desert habitat, Saudi Arabia", Biology, vol. 10, no. 3, 2021. AbstractWebsite

Biomolecules from natural sources, including microbes, have been the basis of treatment of human diseases since the ancient times. Therefore, this study aimed to investigate the potential bioactivity of several actinobacteria isolates form Al-Jouf Desert, Saudi Arabia. Twenty-one actinobac-terial isolates were tested for their antioxidant (flavonoids, phenolics, tocopherols and carotenoids) content, and biological activities, namely FRAP, DPPH, ABTS, SOS and XO inhibition, anti-hemolytic and anti-lipid peroxidation as well as their antibacterial and antiprotozoal activities. Accordingly, five isolates (i.e., Act 2, 12, 15, 19 and 21) were selected and their 90% ethanolic extracts were used. The phylogenetic analysis of the 16S rRNA sequences indicated that the most active isolates be-long to genus Streptomyces. The genus Streptomyces has been documented as a prolific producer of biologically active secondary metabolites against different cancer types. Thus, the anti-blood cancer activity and the possible molecular mechanisms by which several Streptomyces species extracts inhibited the growth of different leukemia cells, i.e., HL-60, K562 and THP-1, were investigated. In general, the five active isolates showed cytotoxic activity against the tested cell lines in a dose dependent manner. Among the potent isolates, isolate Act 12 significantly decreased the cell viability and showed maximum cytotoxic activities against both HL-60 and K562 cells, while isolate Act 15 exhibited maximum cytotoxic activity against THP-1 cells. Moreover, Act 2 and Act 12 reduced cyclooxygenase (COX-2) and lipoxygenase (LOX) activity, which is involved in the proliferation and differentiation of cancer cells and may represent a possible molecular mechanism underlying leukemia growth inhibition. The bioactive antioxidant extracts of the selected Streptomyces species inhibited leukemia cell growth by reducing the COX-2 and LOX activity. Overall, our study not only. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.

Arabi, D. S., O. Hamdy, Z. A. Abdel-Salam, M. S. M. Mohamed, and M. Abdel-Harith, "Utilization of Spectrochemical Analysis and Diffuse Optical Techniques to Reveal Adulteration of Alike Fish Species and Their Microbial Contamination", Food Analytical Methods, vol. 15, issue 4, pp. 1062 - 1073, 2022. Abstract

Fish products are essential sources of animal proteins and numerous nutrients required for healthy human nutrition worldwide. However, some types of low-priced fish may look very similar to some other expensive types, and usually, it is not easy to differentiate between them for inexperienced customers. Moreover, in some markets, adulterating such high-priced fish types through its substitution by cheaper ones or mixing with bacterially spoiled ones, mostly when sold as fish fillets, is sometimes common. Certainly, fish microbial contamination in open markets represents serious hazards for people’s public health. Accordingly, seeking easy and fast fish fraud detection methods and their microbial contamination disclosure is crucial. Currently, available techniques are costly, time-consuming, and requiring special laboratories. In the present work, laser-induced fluorescence (LIF), as a spectrochemical analytical technique and diffuse optical measurements, has been used to discriminate between fillets of low-priced Tilapia and expensive Nile Perch and disclose microbial contamination in any. The experimental data have been analyzed and evaluated using the principal component analysis (PCA), partial least square regression (PLSR), and receiver operatic characteristic (ROC) methods. The results demonstrated the high advantages of optical and spectrochemical techniques in the fast and accurate discrimination between the two fish species. Moreover, LIF spectral band obtained at 490 nm showed a difference in microbial load between both species. © 2022, The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Arabi, D., O. Hamdy, M. S. M. Mohamed, Z. Abdel-Salam, and M. Abdel-Harith, "Discriminating two bacteria via laser-induced breakdown spectroscopy and artificial neural network", AMB Express, vol. 13, issue 1, 2023. Abstract

Rapid and successful clinical diagnosis and bacterial infection treatment depend on accurate identification and differentiation between different pathogenic bacterial species. A lot of efforts have been made to utilize modern techniques which avoid the laborious work and time-consuming of conventional methods to fulfill this task. Among such techniques, laser-induced breakdown spectroscopy (LIBS) can tell much about bacterial identity and functionality. In the present study, a sensitivity-improved version of LIBS, i.e. nano-enhanced LIBS (NELIBS), has been used to discriminate between two different bacteria (Pseudomonas aeruginosa and Proteus mirabilis) belonging to different taxonomic orders. Biogenic silver nanoparticles (AgNPs) are sprinkled onto the samples’ surface to have better discrimination capability of the technique. The obtained spectroscopic results of the NELIBS approach revealed superior differentiation between the two bacterial species compared to the results of the conventional LIBS. Identification of each bacterial species has been achieved in light of the presence of spectral lines of certain elements. On the other hand, the discrimination was successful by comparing the intensity of the spectral lines in the spectra of the two bacteria. In addition, an artificial neural network (ANN) model has been created to assess the variation between the two data sets, affecting the differentiation process. The results revealed that NELIBS provides higher sensitivity and more intense spectral lines with increased detectable elements. The ANN results showed that the accuracy rates are 88% and 92% for LIBS and NELIBS, respectively. In the present work, it has been demonstrated that NELIBS combined with ANN successfully differentiated between both bacteria rapidly with high precision compared to conventional microbiological discrimination techniques and with minimum sample preparation. © 2023, The Author(s).

Attia, Y. A., M. Samer, M. S. M. Mohamed, E. Moustafa, M. Salah, and E. M. Abdelsalam, "Nanocoating of microbial fuel cell electrodes for enhancing bioelectricity generation from wastewater", Biomass Conversion and Biorefinery, vol. 14, issue 1, pp. 847 - 858, 2024. Abstract

Microbial fuel cells (MFCs) are devices where bacteria generate electrical energy by oxidizing organic matter in wastewater. The implementation of MFCs on a commercial scale is limited due to electrode resistances, which are one of the key factors limiting electricity generation. This study presents a method to maximize the electrical power production from MFCs by coating the electrodes using nanomaterials which leads to prototyping novel electrodes having higher electrical conductivity than common electrodes. The voltage reached 1.234 V directly after operating the MFCs, with nanocoated electrodes, and showed voltage stability till the end of the 140 h interval with a peak value of 1.367 V with a maximum areal power density of 116 mW m−2 and a maximum volumetric power density of 15.6 mW m−3. However, the voltage of the control (without coating) was steadily increased to 0.616 V after 22 h with a maximum areal power density of 23.6 mW m−2 and a maximum volumetric power density of 3.2 mW m−3 then showed voltage stability till the end of the 140 h interval. It was found that the coulombic efficiency of the MFCs where its electrodes are coated with graphitic carbon nitride nanosheets was higher than graphene, carbon nanotubes, and the control in a descending order, respectively. By this method, it is possible to improve the electrical conductivity of the MFCs which results in increasing the generated electrical power by 4.9 times the conventional method. © 2022, The Author(s).

Attia, Y. A., M. Samer, M. S. M. Mohamed, M. Salah, E. Moustafa, R. M. A. Hameed, H. Elsayed, and E. M. Abdelsalam, "Enhancing bioelectricity generation from wastewater in microbial fuel cells using carbon nanomaterials", Journal of Chemical Technology and Biotechnology, vol. 99, issue 5, pp. 1172 - 1180, 2024. Abstract

BACKGROUND: Microbial fuel cells (MFCs) offer a promising approach for treating wastewater and generating electrical energy simultaneously. However, their implementation in wastewater treatment plants is hindered by the limited electricity generation, often attributed to the electrolyte's high resistance. This study aimed to improve bioelectricity generation in MFCs by adding nanomaterials to the electrolyte to enhance conductivity. RESULTS: Three types of nanomaterials – carbon nanotubes (CNTs), graphitic carbon nitride (g-C3N4), and reduced graphene oxide (r-GO) – were synthesized and addition to the electrolyte at a concentration of 50 mg in 1.5 L. MFC performance was evaluated, employed a hydraulic retention time (HRT) of 140 h, and compared to a control with no nanomaterials added. The addition of nanomaterials significantly improved MFC performance. Compared to the control, the MFCs with CNTs, g-C3N4, and r-GO exhibited higher voltage: 1.301 V (CNTs), 1.286 V (g-C3N4), 1.280 V (r-GO) versus 0.570 V (control); increased power density: 14.11 mW m−3 (CNTs), 13.78 mW m−3 (g-C3N4), 13.66 mW m−3 (r-GO) versus 2.71 mW m−3 (control); enhanced areal power density: 21.06 mW m−2 (CNTs), 20.57 mW m−2 (g-C3N4), 20.39 mW m−2 (r-GO) versus 4.04 mW m−2 (control); and improved coulombic efficiency: 19.43% (CNTs), 19.19% (g-C3N4), 19.11% (r-GO) versus 8.54% (control). CONCLUSION: Incorporating nanomaterials into the MFC electrolyte significantly increased bioelectricity generation by 5.21 times and coulombic efficiency by 2.28 times compared to the control. This improvement is attributed to the high specific surface area of the nanomaterials, which facilitates the adhesion and growth of microorganisms around the anode, enhancing direct electron transfer. © 2024 Society of Chemical Industry (SCI). © 2024 Society of Chemical Industry (SCI).

Attia, Y. A., E. Abdelsalam, S. Saeed, M. S. M. Mohamed, and M. Samer, "Bioethanol Production from Potato Peels Using Saccharomyces cerevisiae Treated with ZnO and ZnO/g-C3N4 Nanomaterials", Egyptian Journal of Chemistry, vol. 65, issue 13, pp. 309 - 315, 2022. Abstract

Bioethanol is a promising biofuel produced from agricultural wastes. The problem is that the bioconversion of cellulose to bioethanol takes a long time for excellent results. Predominantly, efficient enzymes and active microorganisms (yeast) can enhance the enzymatic saccharification and fermentation bioprocesses, respectively. The addition of nutrients and electron acceptors in form of nanomaterials was found to modify the bioenvironment and to biostimulate the microorganisms to accomplish the target bioprocesses efficiently. The objective of this investigation was to increase bioethanol production from agricultural wastes using nanomaterials. In this study, the bioethanol production from potato peels (as an example of agricultural wastes) was increased using ZnO nanomaterials and ZnO/g-C3N4 nanomaterials with the concentration of 5, 10, 15, 50, 100, and 150 mg/L each as well as the control (without the addition of nanomaterials). It was hypothesized that yeast treatment with nanomaterials (nutrients) leads to biostimulate yeast cells and increases cell activity. Consequently, it is hypothesized that these procedures increase bioethanol production from potato peels over a shorter Hydraulic Retention Time (HRT), i.e., residence time. It was found that the biostimulation of the fungi (yeast) Saccharomyces cerevisiae using 150 mg/L of ZnO/g-C3N4 nanomaterials generated the highest bioethanol concentration of 33.2% compared to all other treatments. © 2022 National Information and Documentation Center (NIDOC)

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Elarabi, N. I., AA Abdelhadi, A. A. Nassrallah, M. S. M. Mohamed, and H. A. R. Abdelhaleem, "Biodegradation of isoproturon by Escherichia coli expressing a Pseudomonas putida catechol 1,2-dioxygenase gene", AMB Express, vol. 13, issue 1, 2023. Abstract

The phenylurea herbicides are persistent in soil and water, necessitating the creation of methods for removing them from the environment. This study aimed to examine the soil microbial diversity, searching for local bacterial isolates able to efficiently degrade the phenylurea herbicide isoproturon, 3-(4-isopropylphenyl)-1, 1-dimethylurea (IPU). The best isolates able to effectively degrade IPU were selected, characterized, and identified as Pseudomonas putida and Acinetobacter johnsonii. The catechol 1, 2-dioxygenase enzyme's catA gene was amplified, cloned, and expressed in E. coli M15. The Expressed E. coli showed high degradation efficiency (44.80%) as analyzed by HPLC after 15 days of inoculation in comparison to P. putida (21.60%). The expression of the catA gene in P. putida and expressed E. coli was measured using quantitative polymerase chain reaction (qPCR). The results displayed a significant increase in the mRNA levels of the catA gene by increasing the incubation time with IPU. Hydrophilic interaction chromatography (HILIC) mass spectrometry analysis revealed that three intermediate metabolites, 1-(4-isopropylphenyl)-3-methylurea (MDIPU), 4-Isopropylaniline (4-IA) and 1-(4-isopropylphenyl) urea (DDIPU) were generated by both P. putida and expressed E. coli. In addition, IPU-induced catA activity was detected in both P. putida and expressed E. coli. The supernatant of both P. putida and expressed E. coli had a significant influence on weed growth. The study clearly exhibited that P. putida and expressed E. coli were capable of metabolizing IPU influentially and thus could be utilized for bioremediation and biodegradation technology development. © 2023, Springer-Verlag GmbH Germany, part of Springer Nature.

Elmelegy, S. A., M. S. Khalil, and M. S. M. Mohamed, "Efficient biodegradation and detoxification of Congo red via newly isolated Bacillus strains", Egyptian Journal of Chemistry, vol. 67, issue 1, pp. 67 - 76, 2024. Abstract

Pollution with xenobiotic compounds such as congo red (CR) is a serious problem in the environment. In the present study, an attempt has been made to screen and isolate a potential local bacterial strains from dye contaminated area for decolorization of CR dye as an example of (azo-dye). Out of 52 bacterial isolates demonstrated the ability to grow on CR dye as a sole carbon source, three bacterial isolates showed high dye decolorization percentage ranged from 65.8 to 81.5% after 4 days of incubation (λ max of CR 498 nm). The selected bacterial strains were identified as Bacillus licheniformis S2, Bacillus amyloliquefaciens S12 and Bacillus subtilis S50 based on morphological, molecular and biochemical characteristics. A set of experiments were carried out to optimize the degradation ability of the selected isolates under different physicochemical conditions such as different concentrations of CR, pH range, temperatures and static and shaking incubation. The results revealed that the three Bacillus species were able to degrade CR more efficiently at static conditions compared to shaking conditions and the optimum CR dye concentration for the three isolates was 100 μM at 37 ºC and pH 7.0. Spectroscopic techniques were performed to evaluate the isolates degradation abilities and to identify the degradation by-products by UV-Vis and GC-MS, indicated the complete degradation of congo red to other less-toxic compounds after 6 days of incubation. The phytotoxicity test on Vicia faba and Triticum aestivum seeds revealed that all bacterial degraded dye metabolites had almost negligible effect on both plant germinations compared to untreated dye, which indicating the successful detoxification of CR dye. Therefore, the selected Bacillus strains from this study might be useful in the treatment of industrial effluent contaminated with synthetic dyes. © 2024 National Information and Documentation Center (NIDOC).

Elshaghabee, F. M. F., A. El-Hussein, and M. S. M. Mohamed, "Enhancement of Labneh Quality by Laser-Induced Modulation of Lactocaseibacillus casei NRRL B-1922", Fermentation, vol. 8, no. 3, 2022. AbstractWebsite

Labneh is positioned in the top ranking of the bestselling dairy products all over the world due to its health benefits and delicious taste. Labneh production depends mainly on probiotic bacteria in the fermentation of milk. Probiotic bacteria have many health benefits, which are driven by their selective bioactive metabolites that quantitively affect the fermentation products. The current investigation aimed to study the implementation of photobiomodulation through the irradiation of Lacticaseibacillus casei NRRL-B-1922 by a He–Ne laser (630 nm) with different laser doses (3, 6 & 12 J/cm2) prior to milk fermentation. This procedure sought to improve the probiotic bacteria’s activities while enhancing the labneh’s characteristics and consequently produce a more favorable labneh product with better marketing qualities. The photobiostimulated bacterial starter was found to induce increased titratable acidity with the moisture reduction of the labneh product under cold storage conditions for 20 days. The effect was most prominent when using a 12 J/cm2 laser dose. The flavor-aiding components, mainly diacetyl and acetaldehyde compounds, and sensory scores were increased in the labneh produced by irradiated L. casei when compared to the non-radiated probiotic culture after storing the products under cold conditions for 20 consecutive days. Moreover, the antioxidant and proteolytic activities of labneh produced by treated L. casei (12 J/cm2 laser dose) after cold storage were significantly elevated by 41 and 14%, respectively. In conclusion, we can report significantly improved selected characteristics in the final products after the employment of photobiomodulation process, the potential application of this concept on the industrial scale, and its implications on lengthening the product shelf life with improved qualities.

Elshaghabee, F. M. F., A. A. A. El-Maksoud, S. A. Alharbi, S. Alfarraj, and M. S. M. Mohamed, "Fortification of acidophilus-bifidus-thermophilus (Abt) fermented milk with heat-treated industrial yeast enhances its selected properties", Molecules, vol. 26, no. 13, 2021. AbstractWebsite

The improvement of milk dairy products’ quality and nutritional value during shelf-life storage is the ultimate goal of many studies worldwide. Therefore, in the present study, prospective beneficial effects of adding two different industrial yeasts, Kluyveromyces lactis and Saccharomyces cerevisiae pretreated by heating at 85◦C for 10 min to be inactivated, before fermentation on some properties of ABT fermented milk were evaluated. The results of this study showed that the addition of 3% and 5% (w/v) heat-treated yeasts to the milk enhanced the growth of starter culture, Lactobacillus acidophilus, Bifidobacteria, and Streptococcus thermophilus, during the fermentation period as well as its viability after 20 days of cold storage at 5 ± 1◦C. Furthermore, levels of lactic and acetic acids were significantly increased from 120.45 ± 0.65 and 457.80 ± 0.70 µg/mL in the control without heat-treated yeast to 145.67 ± 0.77 and 488.32 ± 0.33 µg/mL with 5% supplementation of Sacch. cerevisiae respectively. Moreover, the addition of heat-treated yeasts to ABT fermented milk enhanced the antioxidant capacity by increasing the efficiency of free radical scavenging as well as the proteolytic activity. Taken together, these results suggest promising application of non-viable industrial yeasts as nutrients in the fermentation process of ABT milk to enhance the growth and viability of ABT starter cultures before and after a 20-day cold storage period by improving the fermented milk level of organic acids, antioxidant capacity, and proteolytic activities. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.

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Kamel, Z., M. Saleh, and N. El Namoury, "Biosynthesis, characterization, and antimicrobial activity of silver nanoparticles from actinomycetes", Research Journal of Pharmaceutical, Biological and Chemical Sciences, vol. 7, no. 1, pp. 119-127, 2016. AbstractWebsite
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Khalil, A. M. A., A. M. Saleh, S. M. S. Abo El-Souad, and M. S. M. Mohamed, "Plants from a semi-arid environment as a source of phytochemicals against Fusarium crown and foot rot in zucchini", AMB Express, vol. 13, issue 1, 2023. Abstract

Fusarium crown and foot rot, caused by F. solani f. sp. cucurbitae, are major fungal diseases affecting zucchini and other cucurbits. Despite the efficacy of synthetic fungicides, their health and environmental hazards have highlighted the urgent need for safer alternatives, such as phytochemical-based biocides. Owing to the upregulation of the plant secondary metabolism under stressful conditions, bioprospecting in harsh environments could reveal ore plants for bioactive metabolites. In this study, thirteen wild plants were collected from their natural habitat in a semiarid environment (Yanbu, Saudi Arabia) and extracted to obtain phenolics rich extracts. Total polyphenols, flavonoids, antioxidant capacities and the antifungal activities of the extracts against a pathogenic isolate of F. solani were assessed. Fusarium solani was isolated from infected zucchini and characterized by scanning electron microscopy. Hierarchical clustering analysis of the phytochemical screening and in vitro bioactivity revealed that Rosmarinus officinalis, Pulicaria crispa, Achillea falcata and Haloxylon salicornicum were the richest in polyphenols and the most powerful against F. solani. Further, the extracts of these four plants significantly decreased the disease incidence in zucchini, where P. crispa was the premier. Interestingly, results of transmission electron microscopy revealed that extract of P. crispa, as a representative of the powerful group, induced ultrastructural disorders in fungal cells. Therefore, this study suggests the use of R. officinalis, P. crispa, A. falcata and H. salicornicum grown in semi-arid environments as ore plants to develop phytochemical-based biocides against Fusarium crown and foot rot. © 2023, The Author(s).

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Mohamed, M. S. M., H. M. Mostafa, S. Mohamed, S. I. Abd El-Moez, and Z. Kamel, "Combination of Silver Nanoparticles and Vancomycin to Overcome Antibiotic Resistance in Planktonic/Biofilm Cell from Clinical and Animal Source", Microbial Drug ResistanceMicrobial Drug Resistance: Mary Ann Liebert, Inc., publishers, 2020. AbstractWebsite

This study aims to evaluate the prevalence of multidrug-resistant (MDR) and biofilm-forming pathogens from animal source compared to clinical ones. In addition, to assess the antibacterial and antibiofilm activity of silver nanoparticles (AgNPs) alone and/or mixed with vancomycin. Out of 62 bacterial isolates from animal respiratory tract infection (RTI), 50.00% were defined as MDR, while among human ones, 44.00% were MDR. The bacteria Staphylococcus aureus, Pseudomonas aeruginosa, and Streptococcus pneumoniae were the predominant isolated bacteria from both animal and human origin with frequency percentage of 50.00, 22.32, and 18.75, respectively. Among Staph. aureus strains, mecA gene was detected in 60.00% and 61.54% of animal and human isolates, respectively, while mecALGA251 (mecC) gene was detected in 13.33% and 15.38% of animal and human isolates, respectively. Biofilm formation ability among animal isolates was 83.87%, while among human ones was 86.00%. AgNPs were effective in inhibiting planktonic cells with minimal inhibitory concentration (MIC) values (0.625?10??g/mL), as well as eradicating biofilm with minimal biofilm eradication concentration values (1.25?10??g/mL). Noticeable low MIC of AgNPs was required for the isolates from animal source (0.625?5??g/mL) compared to clinical ones (0.625?10??g/mL). Remarkable reduction in AgNP effective concentration was observed after combination with 1/4 MIC of vancomycin with minimum recorded concentration of 0.08??g/mL. In conclusion, the prevalence of MDR among RT pathogens was recorded with high ability to produce biofilm and virulence factors from both animal and human pathogens. AgNPs showed strong antibacterial and antibiofilm activity alone and mixed with vancomycin, with up to fourfold reduction of AgNP inhibitory dose.This study aims to evaluate the prevalence of multidrug-resistant (MDR) and biofilm-forming pathogens from animal source compared to clinical ones. In addition, to assess the antibacterial and antibiofilm activity of silver nanoparticles (AgNPs) alone and/or mixed with vancomycin. Out of 62 bacterial isolates from animal respiratory tract infection (RTI), 50.00% were defined as MDR, while among human ones, 44.00% were MDR. The bacteria Staphylococcus aureus, Pseudomonas aeruginosa, and Streptococcus pneumoniae were the predominant isolated bacteria from both animal and human origin with frequency percentage of 50.00, 22.32, and 18.75, respectively. Among Staph. aureus strains, mecA gene was detected in 60.00% and 61.54% of animal and human isolates, respectively, while mecALGA251 (mecC) gene was detected in 13.33% and 15.38% of animal and human isolates, respectively. Biofilm formation ability among animal isolates was 83.87%, while among human ones was 86.00%. AgNPs were effective in inhibiting planktonic cells with minimal inhibitory concentration (MIC) values (0.625?10??g/mL), as well as eradicating biofilm with minimal biofilm eradication concentration values (1.25?10??g/mL). Noticeable low MIC of AgNPs was required for the isolates from animal source (0.625?5??g/mL) compared to clinical ones (0.625?10??g/mL). Remarkable reduction in AgNP effective concentration was observed after combination with 1/4 MIC of vancomycin with minimum recorded concentration of 0.08??g/mL. In conclusion, the prevalence of MDR among RT pathogens was recorded with high ability to produce biofilm and virulence factors from both animal and human pathogens. AgNPs showed strong antibacterial and antibiofilm activity alone and mixed with vancomycin, with up to fourfold reduction of AgNP inhibitory dose.

Mohamed, M. S. M., A. F. A. Youssef, and Y. Ahmed, "The potentiality of Lysinibacillus sphaericus DM-3 and Bacillus cereus DM-5 in degrading dimethoate", Egyptian journal of Botany, vol. 58, pp. 217-232, 2018.
Mohamed, M. S. M., N. I. El-Arabi, A. El-Hussein, S. A. El-Maaty, and A. A. Abdelhadi, Reduction of chromium-VI by chromium-resistant Escherichia coli FACU: a prospective bacterium for bioremediation, , vol. 65, issue 4, pp. 687 - 696, 2020. AbstractWebsite

The release of hexavalent chromium [Cr (VI)] into environments has resulted in many undesirable interactions with biological systems for its toxic potential and mutagenicity. Chromate reduction via chromium reductase (ChrR) is a key strategy for detoxifying Cr (VI) to trivalent species of no toxicity. In this study, ten bacterial isolates were isolated from heavily polluted soils, with a strain assigned as FACU, being the most efficient one able to reduce Cr (VI). FACU was identified as Escherichia coli based on morphological and 16S rRNA sequence analyses. Growth parameters and enzymatic actions of FACU were tested under different experimental conditions, in the presence of toxic chromium species. The E. coli FACU was able to reduce chromate at 100 μg/mL conceivably by reducing Cr (VI) into the less harmful Cr (III). Two distinctive optical spectroscopic techniques have been employed throughout the study. Laser-induced breakdown spectroscopy (LIBS) was utilized as qualitative analysis to demonstrate the presence of chromium with the distinctive spectral lines for bacteria such as Ca, Fe, and Na. While UV-visible spectroscopy was incorporated to confirm the reduction capabilities of E. coli after comparing Cr (III) spectrum to that of bacterial product spectrum and they were found to be identical. The chromate reductase specific activity was 361.33 μmol/L of Cr (VI) per min per mg protein. The FACU (EMCC 2289) 16S rRNA sequence and the ChrR-partially isolated gene were submitted to the DDBJ under acc. # numbers LC177419 and LC179020, respectively. The results support that FACU is a promising source of ChrR capable of bioremediation of toxic chromium species.

Mohamed, S. H., M. S. M. Mohamed, M. S. Khalil, W. S. Mohamed, and M. I. Mabrouk, "Antibiofilm activity of papain enzyme against pathogenic Klebsiella pneumoniae", Journal of Applied Pharmaceutical Science, vol. 8, no. 6, pp. 163-168, 2018. AbstractWebsite
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Mohamed, M. S. M., A. A. Abdallah, M. H. Mahran, and A. M. Shalaby, "Potential Alternative Treatment of Ocular Bacterial Infections by Oil Derived from Syzygium Aromaticum Flower (Clove)", Current Eye Research: Taylor & Francis, pp. 1-9, 2018. AbstractWebsite

ABSTRACTPurpose/Aim: This study aims to evaluate the predisposing risk factors and antibiotic resistance of bacterial corneal ulcer to commonly used antibiotics. In addition, assess the in vitro efficacy of plant-derived essential oils (EOs) as safe and effective antimicrobial agents.Methods: Demographic features and predisposing risk factors of corneal ulcer patients were recorded. Isolation and identification of bacteria was performed using conventional microbiological methods. Antibacterial activity was determined by disk diffusion and the micro-dilution broth methods. EOs were extracted by steam distillation and were analyzed by gas chromatography mass spectrometry technique.Results: Out of the 200 patients with corneal ulcer evaluated in this study, the main predisposing factor of bacterial corneal ulcer was trauma (26.5%) and 96.7% isolates were multidrug resistant. Staphylococcus aureus was the predominant isolate 33 cases. Antibiotic susceptibility of bacterial isolates showed that the fourth-generation fluoroquinolones, gatifloxacin was the most effective antibiotic with sensitivity rate 81.3%. Seven selected EOs showed significant activity against most of the tested bacteria. Syzygium aromaticum oil showed high activity against all tested bacterial species with highest sensitivity rate (97.5%) and low minimal inhibitory concentration values against S. aureus (0.10 µl/ml). The chemical composition of the EOs showed that the monoterpenes were predominant. The main constituent of S. aromaticum oil was eugenol (76%).Conclusions: The current study showed that S. aromaticum oil had high antibacterial activity that could be helpful in the treatment of ocular bacterial infections to minimizing the possible side effects of commonly used antibiotic.

Mohamed, M. S. M., F. M. F. Elshaghabee, S. A. Alharbi, and A. El-Hussein, "The Prospective Beneficial Effects of Red Laser Exposure on Lactocaseibacillus casei Fermentation of Skim Milk", Biology, vol. 9, no. 9, 2020. AbstractWebsite

Probiotic lactic acid bacteria are crucial producers of fermented dairy products that are popular functional foods in many countries. The health benefits of probiotic bacteria are mainly attributed to their effective bioactive metabolites. The quality of fermented milk is mainly dependent on the bacterial strain used in the fermentation process. In this study, an innovative technique is used in order to enhance the activities of the probiotic bacteria, quality of fermented milk, and consequently the whole fermentation process. Red laser dosages, at the wavelength of 632.7 nm, were applied to the type strain Lacticaseibacillus casei NRRL-B-1922 before the fermentation of skim milk. The results revealed that the scavenging of 2,2-diphenyl-1-picryl-hydrazyl-hydrate (DPPH) radical and total antioxidant capacity were significantly increased from 21% in untreated control to 56% after bacterial laser irradiation of 12 J/cm2 dosage for 40 min. The antioxidant activity was found to be increased as the red laser dosage increased in a dose-response relationship. Additionally, the lactose fermentation in skim milk medium of 43.22 mg/mL initial concentration into organic acids was enhanced after L. casei irradiation and recorded 23.15 mg/mL compared to control group 28.35 mg/mL without bacterial pre-treatment. These results are correlated with increase of the β-Galactosidase activity, where the L. casei that has been exposed to 40 min of red laser exhibited the higher activity of a 0.37 unit/mL relative to the control 0.25 unit/mL. The assessment of this fermented milk after L. casei laser exposure for 10, 20, and 40 min indicates multiple biological effects, including assimilation of cholesterol as well as proteolytic and antibacterial activity. Our data on the exposure of L. casei to laser beam suggest promising application of red laser in the fermentation process of skim milk.

Mohamed, M. S. M., A. A. Asair, N. A. H. Fetyan, and S. M. Elnagdy, "Complete Biodegradation of Diclofenac by New Bacterial Strains: Postulated Pathways and Degrading Enzymes", Microorganisms, vol. 11, no. 6, 2023. AbstractWebsite

The accumulation of xenobiotic compounds in different environments interrupts the natural ecosystem and induces high toxicity in non-target organisms. Diclofenac is one of the commonly used pharmaceutical drugs that persist in the environment due to its low natural degradation rate and high toxicity. Therefore, this study aimed to isolate potential diclofenac-degrading bacteria, detect the intermediate metabolites formed, and determine the enzyme involved in the degradation process. Four bacterial isolates were selected based on their ability to utilize a high concentration of diclofenac (40 mg/L) as the sole carbon source. The growth conditions for diclofenac degradation were optimized, and bacteria were identified as Pseudomonas aeruginosa (S1), Alcaligenes aquatilis (S2), Achromobacter spanius (S11), and Achromobacter piechaudii (S18). The highest percentage of degradation was recorded (97.79 ± 0.84) after six days of incubation for A. spanius S11, as analyzed by HPLC. To detect and identify biodegradation metabolites, the GC-MS technique was conducted for the most efficient bacterial strains. In all tested isolates, the initial hydroxylation of diclofenac was detected. The cleavage step of the NH bridge between the aromatic rings and the subsequent cleavage of the ring adjacent to or in between the two hydroxyl groups of polyhydroxylated derivatives might be a key step that enables the complete biodegradation of diclofenac by A. piechaudii S18, as well as P. aeruginosa S1. Additionally, the laccase, peroxidase, and dioxygenase enzyme activities of the two Achromobacter strains, as well as P. aeruginosa S1, were tested in the presence and absence of diclofenac. The obtained results from this work are expected to be a useful reference for the development of effective detoxification bioprocesses utilizing bacterial cells as biocatalysts. The complete removal of pharmaceuticals from polluted water will stimulate water reuse, meeting the growing worldwide demand for clean and safe freshwater.

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