Publications

Export 35 results:
Sort by: Author Title Type [ Year  (Desc)]
2024
Elmelegy, S. A., M. S. Khalil, and M. S. M. Mohamed, "Efficient biodegradation and detoxification of Congo red via newly isolated Bacillus strains", Egyptian Journal of Chemistry, vol. 67, issue 1, pp. 67 - 76, 2024. Abstract

Pollution with xenobiotic compounds such as congo red (CR) is a serious problem in the environment. In the present study, an attempt has been made to screen and isolate a potential local bacterial strains from dye contaminated area for decolorization of CR dye as an example of (azo-dye). Out of 52 bacterial isolates demonstrated the ability to grow on CR dye as a sole carbon source, three bacterial isolates showed high dye decolorization percentage ranged from 65.8 to 81.5% after 4 days of incubation (λ max of CR 498 nm). The selected bacterial strains were identified as Bacillus licheniformis S2, Bacillus amyloliquefaciens S12 and Bacillus subtilis S50 based on morphological, molecular and biochemical characteristics. A set of experiments were carried out to optimize the degradation ability of the selected isolates under different physicochemical conditions such as different concentrations of CR, pH range, temperatures and static and shaking incubation. The results revealed that the three Bacillus species were able to degrade CR more efficiently at static conditions compared to shaking conditions and the optimum CR dye concentration for the three isolates was 100 μM at 37 ºC and pH 7.0. Spectroscopic techniques were performed to evaluate the isolates degradation abilities and to identify the degradation by-products by UV-Vis and GC-MS, indicated the complete degradation of congo red to other less-toxic compounds after 6 days of incubation. The phytotoxicity test on Vicia faba and Triticum aestivum seeds revealed that all bacterial degraded dye metabolites had almost negligible effect on both plant germinations compared to untreated dye, which indicating the successful detoxification of CR dye. Therefore, the selected Bacillus strains from this study might be useful in the treatment of industrial effluent contaminated with synthetic dyes. © 2024 National Information and Documentation Center (NIDOC).

Attia, Y. A., M. Samer, M. S. M. Mohamed, M. Salah, E. Moustafa, R. M. A. Hameed, H. Elsayed, and E. M. Abdelsalam, "Enhancing bioelectricity generation from wastewater in microbial fuel cells using carbon nanomaterials", Journal of Chemical Technology and Biotechnology, vol. 99, issue 5, pp. 1172 - 1180, 2024. Abstract

BACKGROUND: Microbial fuel cells (MFCs) offer a promising approach for treating wastewater and generating electrical energy simultaneously. However, their implementation in wastewater treatment plants is hindered by the limited electricity generation, often attributed to the electrolyte's high resistance. This study aimed to improve bioelectricity generation in MFCs by adding nanomaterials to the electrolyte to enhance conductivity. RESULTS: Three types of nanomaterials – carbon nanotubes (CNTs), graphitic carbon nitride (g-C3N4), and reduced graphene oxide (r-GO) – were synthesized and addition to the electrolyte at a concentration of 50 mg in 1.5 L. MFC performance was evaluated, employed a hydraulic retention time (HRT) of 140 h, and compared to a control with no nanomaterials added. The addition of nanomaterials significantly improved MFC performance. Compared to the control, the MFCs with CNTs, g-C3N4, and r-GO exhibited higher voltage: 1.301 V (CNTs), 1.286 V (g-C3N4), 1.280 V (r-GO) versus 0.570 V (control); increased power density: 14.11 mW m−3 (CNTs), 13.78 mW m−3 (g-C3N4), 13.66 mW m−3 (r-GO) versus 2.71 mW m−3 (control); enhanced areal power density: 21.06 mW m−2 (CNTs), 20.57 mW m−2 (g-C3N4), 20.39 mW m−2 (r-GO) versus 4.04 mW m−2 (control); and improved coulombic efficiency: 19.43% (CNTs), 19.19% (g-C3N4), 19.11% (r-GO) versus 8.54% (control). CONCLUSION: Incorporating nanomaterials into the MFC electrolyte significantly increased bioelectricity generation by 5.21 times and coulombic efficiency by 2.28 times compared to the control. This improvement is attributed to the high specific surface area of the nanomaterials, which facilitates the adhesion and growth of microorganisms around the anode, enhancing direct electron transfer. © 2024 Society of Chemical Industry (SCI). © 2024 Society of Chemical Industry (SCI).

Attia, Y. A., M. Samer, M. S. M. Mohamed, E. Moustafa, M. Salah, and E. M. Abdelsalam, "Nanocoating of microbial fuel cell electrodes for enhancing bioelectricity generation from wastewater", Biomass Conversion and Biorefinery, vol. 14, issue 1, pp. 847 - 858, 2024. Abstract

Microbial fuel cells (MFCs) are devices where bacteria generate electrical energy by oxidizing organic matter in wastewater. The implementation of MFCs on a commercial scale is limited due to electrode resistances, which are one of the key factors limiting electricity generation. This study presents a method to maximize the electrical power production from MFCs by coating the electrodes using nanomaterials which leads to prototyping novel electrodes having higher electrical conductivity than common electrodes. The voltage reached 1.234 V directly after operating the MFCs, with nanocoated electrodes, and showed voltage stability till the end of the 140 h interval with a peak value of 1.367 V with a maximum areal power density of 116 mW m−2 and a maximum volumetric power density of 15.6 mW m−3. However, the voltage of the control (without coating) was steadily increased to 0.616 V after 22 h with a maximum areal power density of 23.6 mW m−2 and a maximum volumetric power density of 3.2 mW m−3 then showed voltage stability till the end of the 140 h interval. It was found that the coulombic efficiency of the MFCs where its electrodes are coated with graphitic carbon nitride nanosheets was higher than graphene, carbon nanotubes, and the control in a descending order, respectively. By this method, it is possible to improve the electrical conductivity of the MFCs which results in increasing the generated electrical power by 4.9 times the conventional method. © 2022, The Author(s).

2023
Elarabi, N. I., AA Abdelhadi, A. A. Nassrallah, M. S. M. Mohamed, and H. A. R. Abdelhaleem, "Biodegradation of isoproturon by Escherichia coli expressing a Pseudomonas putida catechol 1,2-dioxygenase gene", AMB Express, vol. 13, issue 1, 2023. Abstract

The phenylurea herbicides are persistent in soil and water, necessitating the creation of methods for removing them from the environment. This study aimed to examine the soil microbial diversity, searching for local bacterial isolates able to efficiently degrade the phenylurea herbicide isoproturon, 3-(4-isopropylphenyl)-1, 1-dimethylurea (IPU). The best isolates able to effectively degrade IPU were selected, characterized, and identified as Pseudomonas putida and Acinetobacter johnsonii. The catechol 1, 2-dioxygenase enzyme's catA gene was amplified, cloned, and expressed in E. coli M15. The Expressed E. coli showed high degradation efficiency (44.80%) as analyzed by HPLC after 15 days of inoculation in comparison to P. putida (21.60%). The expression of the catA gene in P. putida and expressed E. coli was measured using quantitative polymerase chain reaction (qPCR). The results displayed a significant increase in the mRNA levels of the catA gene by increasing the incubation time with IPU. Hydrophilic interaction chromatography (HILIC) mass spectrometry analysis revealed that three intermediate metabolites, 1-(4-isopropylphenyl)-3-methylurea (MDIPU), 4-Isopropylaniline (4-IA) and 1-(4-isopropylphenyl) urea (DDIPU) were generated by both P. putida and expressed E. coli. In addition, IPU-induced catA activity was detected in both P. putida and expressed E. coli. The supernatant of both P. putida and expressed E. coli had a significant influence on weed growth. The study clearly exhibited that P. putida and expressed E. coli were capable of metabolizing IPU influentially and thus could be utilized for bioremediation and biodegradation technology development. © 2023, Springer-Verlag GmbH Germany, part of Springer Nature.

Abdelmoneim, T. K., M. S. M. Mohamed, I. A. Abdelhamid, S. F. M. Wahdan, and M. A. M. Atia, "Development of rapid and precise approach for quantification of bacterial taxa correlated with soil health", Frontiers in Microbiology, vol. 13, 2023. Abstract

The structure and dynamic of soil bacterial community play a crucial role in soil health and plant productivity. However, there is a gap in studying the un−/or reclaimed soil bacteriome and its impact on future plant performance. The 16S metagenomic analysis is expensive and utilize sophisticated pipelines, making it unfavorable for researchers. Here, we aim to perform (1) in silico and in vitro validation of taxon-specific qPCR primer-panel in the detection of the beneficial soil bacterial community, to ensure its specificity and precision, and (2) multidimensional analysis of three soils/locations in Egypt (‘Q’, ‘B’, and ‘G’ soils) in terms of their physicochemical properties, bacteriome composition, and wheat productivity as a model crop. The in silico results disclosed that almost all tested primers showed high specificity and precision toward the target taxa. Among 17 measured soil properties, the electrical conductivity (EC) value (up to 5 dS/m) of ‘Q’ soil provided an efficient indicator for soil health among the tested soils. The 16S NGS analysis showed that the soil bacteriome significantly drives future plant performance, especially the abundance of Proteobacteria and Actinobacteria as key indicators. The functional prediction analysis results disclosed a high percentage of N-fixing bacterial taxa in ‘Q’ soil compared to other soils, which reflects their positive impact on wheat productivity. The taxon-specific qPCR primer-panel results revealed a precise quantification of the targeted taxa compared to the 16S NGS analysis. Moreover, 12 agro-morphological parameters were determined for grown wheat plants, and their results showed a high yield in the ‘Q’ soil compared to other soils; this could be attributed to the increased abundance of Proteobacteria and Actinobacteria, high enrichment in nutrients (N and K), or increased EC/nutrient availability. Ultimately, the potential use of a taxon-specific qPCR primer-panel as an alternative approach to NGS provides a cheaper, user-friendly setup with high accuracy. Copyright © 2023 Abdelmoneim, Mohamed, Abdelhamid, Wahdan and Atia.

Arabi, D., O. Hamdy, M. S. M. Mohamed, Z. Abdel-Salam, and M. Abdel-Harith, "Discriminating two bacteria via laser-induced breakdown spectroscopy and artificial neural network", AMB Express, vol. 13, issue 1, 2023. Abstract

Rapid and successful clinical diagnosis and bacterial infection treatment depend on accurate identification and differentiation between different pathogenic bacterial species. A lot of efforts have been made to utilize modern techniques which avoid the laborious work and time-consuming of conventional methods to fulfill this task. Among such techniques, laser-induced breakdown spectroscopy (LIBS) can tell much about bacterial identity and functionality. In the present study, a sensitivity-improved version of LIBS, i.e. nano-enhanced LIBS (NELIBS), has been used to discriminate between two different bacteria (Pseudomonas aeruginosa and Proteus mirabilis) belonging to different taxonomic orders. Biogenic silver nanoparticles (AgNPs) are sprinkled onto the samples’ surface to have better discrimination capability of the technique. The obtained spectroscopic results of the NELIBS approach revealed superior differentiation between the two bacterial species compared to the results of the conventional LIBS. Identification of each bacterial species has been achieved in light of the presence of spectral lines of certain elements. On the other hand, the discrimination was successful by comparing the intensity of the spectral lines in the spectra of the two bacteria. In addition, an artificial neural network (ANN) model has been created to assess the variation between the two data sets, affecting the differentiation process. The results revealed that NELIBS provides higher sensitivity and more intense spectral lines with increased detectable elements. The ANN results showed that the accuracy rates are 88% and 92% for LIBS and NELIBS, respectively. In the present work, it has been demonstrated that NELIBS combined with ANN successfully differentiated between both bacteria rapidly with high precision compared to conventional microbiological discrimination techniques and with minimum sample preparation. © 2023, The Author(s).

Tammam, A. M., M. S. M. Mohamed, and H. Moubasher, "Optimisation of Fungal Laccase Production from Monodictys castaneae", ASM Science Journal, vol. 18, 2023. Abstract

Laccases are copper-containing oxidase enzymes that have broad substrate specificity and applicability in industrial processes. The purpose of this work was to optimise laccase production by a certain endophytic fungus. Monodictys castaneae (Wallr.) Hughes was cultured and incubated using different nutritional and physiological factors affecting laccase production. It was found that the optimum physiological conditions for laccase production were 4 disc inoculum size, a 9-day fermentation period, pH 5, and 28°C. The enzyme was purified using acetone precipitation, gel filtration, and ion-exchange chromatography. The enzyme was identified as a monomeric protein with a molecular mass of 63 kDa by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Different concentrations of CuSO4 were used to stimulate laccase production and activity. A 0.15 g/l concentration of CuSO4 was the optimum dosage for laccase activity enhancement. For enzyme-guaiacol interaction, the optimal pH and temperature were 5.4 and 35 °C, respectively. The laccase activity was highly stimulated using 3 mM and 7 mM concentrations of chloride salts of Cd+2, Ca+2, Cr+2 and Fe+3, but the enzyme activity was slightly inhibited by 10 mM concentrations of these metal ions. According to all previous results, Monodictys castaneae showed promising potential as a producer of laccase. © (2023), (Akademi Sains Malaysia). All Rights Reserved.

Khalil, A. M. A., A. M. Saleh, S. M. S. Abo El-Souad, and M. S. M. Mohamed, "Plants from a semi-arid environment as a source of phytochemicals against Fusarium crown and foot rot in zucchini", AMB Express, vol. 13, issue 1, 2023. Abstract

Fusarium crown and foot rot, caused by F. solani f. sp. cucurbitae, are major fungal diseases affecting zucchini and other cucurbits. Despite the efficacy of synthetic fungicides, their health and environmental hazards have highlighted the urgent need for safer alternatives, such as phytochemical-based biocides. Owing to the upregulation of the plant secondary metabolism under stressful conditions, bioprospecting in harsh environments could reveal ore plants for bioactive metabolites. In this study, thirteen wild plants were collected from their natural habitat in a semiarid environment (Yanbu, Saudi Arabia) and extracted to obtain phenolics rich extracts. Total polyphenols, flavonoids, antioxidant capacities and the antifungal activities of the extracts against a pathogenic isolate of F. solani were assessed. Fusarium solani was isolated from infected zucchini and characterized by scanning electron microscopy. Hierarchical clustering analysis of the phytochemical screening and in vitro bioactivity revealed that Rosmarinus officinalis, Pulicaria crispa, Achillea falcata and Haloxylon salicornicum were the richest in polyphenols and the most powerful against F. solani. Further, the extracts of these four plants significantly decreased the disease incidence in zucchini, where P. crispa was the premier. Interestingly, results of transmission electron microscopy revealed that extract of P. crispa, as a representative of the powerful group, induced ultrastructural disorders in fungal cells. Therefore, this study suggests the use of R. officinalis, P. crispa, A. falcata and H. salicornicum grown in semi-arid environments as ore plants to develop phytochemical-based biocides against Fusarium crown and foot rot. © 2023, The Author(s).

Ouf, S. A., F. A. El-Amriti, M. A. Abu-Elghait, S. E. Desouky, and M. S. M. Mohamed, "Role of Plant Growth Promoting Rhizobacteria in Healthy and Sustainable Agriculture", Egyptian Journal of Botany, vol. 63, issue 2, pp. 333 - 359, 2023. Abstract

CONVENTIONAL agriculture plays a vital role in meeting the increasing demands for food which result from the continuous rising of the human population. Nowadays farmers use more and more amounts of chemical fertilizers and pesticides which have a bad influence on soil quality, the ecosystem, and the health of humans. Hence, it is important to explore other approaches to decrease the application of chemical fertilizers and enhance crop productivity. Inoculation of the crop with plant growth promoting rhizobacteria (PGPR) to augment sustainable agriculture production is another strategy that is eco-friendly and could be carried out in the long run. PGPR is a group of bacteria able to colonize the root of plants and increase their growth and yield. They help in increasing water absorption, suppress pathogens, and also enhance the uptake of nutrients from soil. Biochemical applications by which rhizobacteria can stimulate the growth of plants were discussed in this article; (i) bio-stimulants: represented by particular phytohormones synthesized by PGPR for e.g. auxins or indole acetic acid (IAA), cytokinins, gibberellic acid (GA) and ethylene, (ii) biofertilization: through helping the uptake of many nutrients from the environment e.g. biological nitrogen fixation, phosphate solubilization and production of siderophore, (iii) bioprotectants or biocontrol: by preventing plant diseases through antibiotic, lytic enzymes and/or hydrogen cyanide (HCN) production. © 2023 National Information and Documentation Center (NIDOC).

Mohamed, M. S. M., A. A. Asair, N. A. H. Fetyan, and S. M. Elnagdy, "Complete Biodegradation of Diclofenac by New Bacterial Strains: Postulated Pathways and Degrading Enzymes", Microorganisms, vol. 11, no. 6, 2023. AbstractWebsite

The accumulation of xenobiotic compounds in different environments interrupts the natural ecosystem and induces high toxicity in non-target organisms. Diclofenac is one of the commonly used pharmaceutical drugs that persist in the environment due to its low natural degradation rate and high toxicity. Therefore, this study aimed to isolate potential diclofenac-degrading bacteria, detect the intermediate metabolites formed, and determine the enzyme involved in the degradation process. Four bacterial isolates were selected based on their ability to utilize a high concentration of diclofenac (40 mg/L) as the sole carbon source. The growth conditions for diclofenac degradation were optimized, and bacteria were identified as Pseudomonas aeruginosa (S1), Alcaligenes aquatilis (S2), Achromobacter spanius (S11), and Achromobacter piechaudii (S18). The highest percentage of degradation was recorded (97.79 ± 0.84) after six days of incubation for A. spanius S11, as analyzed by HPLC. To detect and identify biodegradation metabolites, the GC-MS technique was conducted for the most efficient bacterial strains. In all tested isolates, the initial hydroxylation of diclofenac was detected. The cleavage step of the NH bridge between the aromatic rings and the subsequent cleavage of the ring adjacent to or in between the two hydroxyl groups of polyhydroxylated derivatives might be a key step that enables the complete biodegradation of diclofenac by A. piechaudii S18, as well as P. aeruginosa S1. Additionally, the laccase, peroxidase, and dioxygenase enzyme activities of the two Achromobacter strains, as well as P. aeruginosa S1, were tested in the presence and absence of diclofenac. The obtained results from this work are expected to be a useful reference for the development of effective detoxification bioprocesses utilizing bacterial cells as biocatalysts. The complete removal of pharmaceuticals from polluted water will stimulate water reuse, meeting the growing worldwide demand for clean and safe freshwater.

2022
Attia, Y. A., E. Abdelsalam, S. Saeed, M. S. M. Mohamed, and M. Samer, "Bioethanol Production from Potato Peels Using Saccharomyces cerevisiae Treated with ZnO and ZnO/g-C3N4 Nanomaterials", Egyptian Journal of Chemistry, vol. 65, issue 13, pp. 309 - 315, 2022. Abstract

Bioethanol is a promising biofuel produced from agricultural wastes. The problem is that the bioconversion of cellulose to bioethanol takes a long time for excellent results. Predominantly, efficient enzymes and active microorganisms (yeast) can enhance the enzymatic saccharification and fermentation bioprocesses, respectively. The addition of nutrients and electron acceptors in form of nanomaterials was found to modify the bioenvironment and to biostimulate the microorganisms to accomplish the target bioprocesses efficiently. The objective of this investigation was to increase bioethanol production from agricultural wastes using nanomaterials. In this study, the bioethanol production from potato peels (as an example of agricultural wastes) was increased using ZnO nanomaterials and ZnO/g-C3N4 nanomaterials with the concentration of 5, 10, 15, 50, 100, and 150 mg/L each as well as the control (without the addition of nanomaterials). It was hypothesized that yeast treatment with nanomaterials (nutrients) leads to biostimulate yeast cells and increases cell activity. Consequently, it is hypothesized that these procedures increase bioethanol production from potato peels over a shorter Hydraulic Retention Time (HRT), i.e., residence time. It was found that the biostimulation of the fungi (yeast) Saccharomyces cerevisiae using 150 mg/L of ZnO/g-C3N4 nanomaterials generated the highest bioethanol concentration of 33.2% compared to all other treatments. © 2022 National Information and Documentation Center (NIDOC)

Saeed, S., M. Samer, M. S. M. Mohamed, E. Abdelsalam, Y. M. A. Mohamed, S. H. Abdel‑Hafez, and Y. A. Attia, "Implementation of graphitic carbon nitride nanomaterials and laser irradiation for increasing bioethanol production from potato processing wastes", Environmental Science and Pollution Research, vol. 29, issue 23, pp. 34887 - 34897, 2022. Abstract

Agricultural and agro-industrial wastes (e.g., potato peel waste) are causing severe environmental problems. The processes of pretreatment, saccharification, and fermentation are the major obstacles in bioethanol production from wastes and must be overcome by efficient novel techniques. The effect of exposing the fungi (yeast) Saccharomyces cerevisiae to laser source with the addition of graphitic carbon nitride nanosheets (g-C3N4) with different concentrations on bioethanol production was investigated through the implementation of a batch anaerobic system and using potato peel waste (PPW). Dichromate test was implemented as quantitative analysis for quantification of the bioethanol yield. The benefits of this test were the appearance of green color indicating the identification of ethanol (C2H5OH) by bare eye and the ease to calculate the bioethanol yield through UV–visible spectrophotometry. The control sample (0.0 ppm of g-C3N4) showed only a 4% yield of bioethanol; however, by adding 150 ppm to PPW medium, 22.61% of ethanol was produced. Besides, laser irradiations (blue and red) as influencing parameters were studied with and without the addition of g-C3N4 nanomaterials aiming to increase the bioethanol. It was determined that the laser irradiation can trigger the bioethanol production (in case of red: 13.13% and in case of blue: 16.14% yields, respectively) compared to the control sample (in absence of g-C3N4). However, by adding different concentrations of g-C3N4 nanomaterials from 5 to 150 ppm, the bioethanol yield was increased as follows: in case of red: 56.11% and, in case of blue: 56.77%, respectively. It was found that using fungi and exposing it to the blue laser diode source having a wavelength of 450 nm and a power of 250 mW for a duration of 30 min with the addition of 150 mg L−1 of g-C3N4 nanomaterials delivered the highest bioethanol yield from PPW. © 2021, The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Abdelkader, A. A., M. S. Khalil, and M. S. M. Mohamed, "Simultaneous biodegradation of λ-cyhalothrin pesticide and Vicia faba growth promotion under greenhouse conditions", AMB Express, vol. 12, issue 1, 2022. Abstract

λ-cyhalothrin is a widely used synthetic pyrethroid insecticide and its persistence in plant, soil and water exerts a detrimental effect on humans as well as the environment. There are many studies regarding isolated bacteria capable of degrading λ-cyhalothrin in vitro. However, limited work has been done examining the microbial degradation of λ-cyhalothrin together with plant growth promotion under greenhouse conditions. In this study, 43 bacterial strains were isolated from heavily polluted soil with λ-cyhalothrin by the enrichment technique. The plant growth promotion characteristics of all isolates were evaluated. The results revealed that five isolates were potential in λ-cyhalothrin biodegradation at high concentration (1200 mg/L) within only 24 h together with their high plant growth promotion abilities. The morphological, biochemical and 16S rDNA sequence analyses identified the isolates as Bacillus subtilis strains. The GC/MS analysis revealed that the selected isolates reached high levels of degradation after only two days, the degradation percentage ranged from 95.72 to 99.52% after 48 h of incubation. Furthermore, the degradation pathway for complete detoxification and metabolism of λ-cyhalothrin was established. Moreover, greenhouse experiment was conducted, the results indicate that the application of seed coat significantly enhanced Vicia faba seedling growth and caused an increase from 38.4 to 40.2% percentage of fresh and dry weight, respectively compared to untreated control. All isolates were effective to remove the pesticide residues in Vicia faba seedlings and recorded the highest degradation percentage of 83.79 under greenhouse conditions. Therefore, it can be concluded that the Bacillus subtilis strains isolated in this study have a dual potential role in complete mineralization of λ-cyhalothrin residues in vivo as well as effective biofertilization for future use in sustainable agriculture. © 2022, The Author(s).

Arabi, D. S., O. Hamdy, Z. A. Abdel-Salam, M. S. M. Mohamed, and M. Abdel-Harith, "Utilization of Spectrochemical Analysis and Diffuse Optical Techniques to Reveal Adulteration of Alike Fish Species and Their Microbial Contamination", Food Analytical Methods, vol. 15, issue 4, pp. 1062 - 1073, 2022. Abstract

Fish products are essential sources of animal proteins and numerous nutrients required for healthy human nutrition worldwide. However, some types of low-priced fish may look very similar to some other expensive types, and usually, it is not easy to differentiate between them for inexperienced customers. Moreover, in some markets, adulterating such high-priced fish types through its substitution by cheaper ones or mixing with bacterially spoiled ones, mostly when sold as fish fillets, is sometimes common. Certainly, fish microbial contamination in open markets represents serious hazards for people’s public health. Accordingly, seeking easy and fast fish fraud detection methods and their microbial contamination disclosure is crucial. Currently, available techniques are costly, time-consuming, and requiring special laboratories. In the present work, laser-induced fluorescence (LIF), as a spectrochemical analytical technique and diffuse optical measurements, has been used to discriminate between fillets of low-priced Tilapia and expensive Nile Perch and disclose microbial contamination in any. The experimental data have been analyzed and evaluated using the principal component analysis (PCA), partial least square regression (PLSR), and receiver operatic characteristic (ROC) methods. The results demonstrated the high advantages of optical and spectrochemical techniques in the fast and accurate discrimination between the two fish species. Moreover, LIF spectral band obtained at 490 nm showed a difference in microbial load between both species. © 2022, The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Elshaghabee, F. M. F., A. El-Hussein, and M. S. M. Mohamed, "Enhancement of Labneh Quality by Laser-Induced Modulation of Lactocaseibacillus casei NRRL B-1922", Fermentation, vol. 8, no. 3, 2022. AbstractWebsite

Labneh is positioned in the top ranking of the bestselling dairy products all over the world due to its health benefits and delicious taste. Labneh production depends mainly on probiotic bacteria in the fermentation of milk. Probiotic bacteria have many health benefits, which are driven by their selective bioactive metabolites that quantitively affect the fermentation products. The current investigation aimed to study the implementation of photobiomodulation through the irradiation of Lacticaseibacillus casei NRRL-B-1922 by a He–Ne laser (630 nm) with different laser doses (3, 6 & 12 J/cm2) prior to milk fermentation. This procedure sought to improve the probiotic bacteria’s activities while enhancing the labneh’s characteristics and consequently produce a more favorable labneh product with better marketing qualities. The photobiostimulated bacterial starter was found to induce increased titratable acidity with the moisture reduction of the labneh product under cold storage conditions for 20 days. The effect was most prominent when using a 12 J/cm2 laser dose. The flavor-aiding components, mainly diacetyl and acetaldehyde compounds, and sensory scores were increased in the labneh produced by irradiated L. casei when compared to the non-radiated probiotic culture after storing the products under cold conditions for 20 consecutive days. Moreover, the antioxidant and proteolytic activities of labneh produced by treated L. casei (12 J/cm2 laser dose) after cold storage were significantly elevated by 41 and 14%, respectively. In conclusion, we can report significantly improved selected characteristics in the final products after the employment of photobiomodulation process, the potential application of this concept on the industrial scale, and its implications on lengthening the product shelf life with improved qualities.

2021
Almuhayawi, M. S., M. S. M. Mohamed, M. Abdel-Mawgoud, S. Selim, S. K. Al Jaouni, and H. Abdelgawad, "Bioactive potential of several actinobacteria isolated from microbiologically barely explored desert habitat, Saudi Arabia", Biology, vol. 10, no. 3, 2021. AbstractWebsite

Biomolecules from natural sources, including microbes, have been the basis of treatment of human diseases since the ancient times. Therefore, this study aimed to investigate the potential bioactivity of several actinobacteria isolates form Al-Jouf Desert, Saudi Arabia. Twenty-one actinobac-terial isolates were tested for their antioxidant (flavonoids, phenolics, tocopherols and carotenoids) content, and biological activities, namely FRAP, DPPH, ABTS, SOS and XO inhibition, anti-hemolytic and anti-lipid peroxidation as well as their antibacterial and antiprotozoal activities. Accordingly, five isolates (i.e., Act 2, 12, 15, 19 and 21) were selected and their 90% ethanolic extracts were used. The phylogenetic analysis of the 16S rRNA sequences indicated that the most active isolates be-long to genus Streptomyces. The genus Streptomyces has been documented as a prolific producer of biologically active secondary metabolites against different cancer types. Thus, the anti-blood cancer activity and the possible molecular mechanisms by which several Streptomyces species extracts inhibited the growth of different leukemia cells, i.e., HL-60, K562 and THP-1, were investigated. In general, the five active isolates showed cytotoxic activity against the tested cell lines in a dose dependent manner. Among the potent isolates, isolate Act 12 significantly decreased the cell viability and showed maximum cytotoxic activities against both HL-60 and K562 cells, while isolate Act 15 exhibited maximum cytotoxic activity against THP-1 cells. Moreover, Act 2 and Act 12 reduced cyclooxygenase (COX-2) and lipoxygenase (LOX) activity, which is involved in the proliferation and differentiation of cancer cells and may represent a possible molecular mechanism underlying leukemia growth inhibition. The bioactive antioxidant extracts of the selected Streptomyces species inhibited leukemia cell growth by reducing the COX-2 and LOX activity. Overall, our study not only. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.

Moustafa, E., E. Abdelsalam, Y. A. Attia, M. S. M. Mohamed, M. Salah, M. A. Moselhy, A. S. Ali, and M. Samer, "Enhancing the performance of microbial fuel cells by installing an air pump to the cathode chamber", Egyptian Journal of Chemistry, vol. 64, no. 10, pp. 5471-5476, 2021. AbstractWebsite

The microbial fuel cells (MFCs) are biochemical devices in which bacteria create electrical power by oxidizing simple compounds such as glucose as well as complex organic matter in wastewater. In this study, pumping air into the cathode chamber and its effect on microbial fuel cell performance was investigated. The metabolism of bacteria existed in wastewater was responsible for the generation of bioelectricity. The developed MFC system was designed by utilizing phosphate buffer to operate the system at controlled pH equal 7 and at a stable temperature of 30°C. It was found that increasing oxygen supply to the cathode chamber has a positive effect on the cell performance by increasing the voltage value. Generally, the efficiency of microbial fuel cell was enhanced in the case of cathodic chamber aeration in comparison to the case of no aeration was applied. It was found that the voltage increased in the case of oxygen supply to reach 0.45 mv with a stability over the 138 h of the experiment compared to the case of no aeration was applied where the voltage reached only 0.2 mV with stability in one case and 0.4 mV after 78 h of operation with instability in the second case. Therefore, the performance of the microbial fuel cell improved. It can be concluded that oxygen concentration affects both reaction kinetics and final power efficiency. © 2021 National Information and Documentation Center (NIDOC).

Elshaghabee, F. M. F., A. A. A. El-Maksoud, S. A. Alharbi, S. Alfarraj, and M. S. M. Mohamed, "Fortification of acidophilus-bifidus-thermophilus (Abt) fermented milk with heat-treated industrial yeast enhances its selected properties", Molecules, vol. 26, no. 13, 2021. AbstractWebsite

The improvement of milk dairy products’ quality and nutritional value during shelf-life storage is the ultimate goal of many studies worldwide. Therefore, in the present study, prospective beneficial effects of adding two different industrial yeasts, Kluyveromyces lactis and Saccharomyces cerevisiae pretreated by heating at 85◦C for 10 min to be inactivated, before fermentation on some properties of ABT fermented milk were evaluated. The results of this study showed that the addition of 3% and 5% (w/v) heat-treated yeasts to the milk enhanced the growth of starter culture, Lactobacillus acidophilus, Bifidobacteria, and Streptococcus thermophilus, during the fermentation period as well as its viability after 20 days of cold storage at 5 ± 1◦C. Furthermore, levels of lactic and acetic acids were significantly increased from 120.45 ± 0.65 and 457.80 ± 0.70 µg/mL in the control without heat-treated yeast to 145.67 ± 0.77 and 488.32 ± 0.33 µg/mL with 5% supplementation of Sacch. cerevisiae respectively. Moreover, the addition of heat-treated yeasts to ABT fermented milk enhanced the antioxidant capacity by increasing the efficiency of free radical scavenging as well as the proteolytic activity. Taken together, these results suggest promising application of non-viable industrial yeasts as nutrients in the fermentation process of ABT milk to enhance the growth and viability of ABT starter cultures before and after a 20-day cold storage period by improving the fermented milk level of organic acids, antioxidant capacity, and proteolytic activities. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.

2020
Warrad, M., Y. M. Hassan, M. S. M. Mohamed, N. Hagagy, O. A. Al-Maghrabi, S. Selim, A. M. Saleh, and H. AbdElgawad, "A Bioactive Fraction from Streptomyces sp. Enhances Maize Tolerance against Drought Stress", Journal of Microbiology and Biotechnology, vol. 30, issue 8: The Korean Society for Microbiology and Biotechnology, pp. 1156 - 1168, 2020/08/. AbstractWebsite

Drought stress is threatening the growth and productivity of many economical crops. Therefore, it is necessary to establish innovative and efficient approaches for improving crop growth and productivity. Here we investigated the potentials of the cell-free extract of Actinobacteria (Ac) isolated from a semi-arid habitat (Al-Jouf region, Saudi Arabia) to recover the reduction in maize growth and improve the physiological stress tolerance induced by drought. Three Ac isolates were screened for production of secondary metabolites, antioxidant and antimicrobial activities. The isolate Ac3 revealed the highest levels of flavonoids, antioxidant and antimicrobial activities in addition to having abilities to produce siderophores and phytohormones. Based on seed germination experiment, the selected bioactive fraction of Ac3 cell-free extract (F2.7, containing mainly isoquercetin), increased the growth and photosynthesis rate under drought stress. Moreover, F2.7 application significantly alleviated drought stress-induced increases in H2O2, lipid peroxidation (MDA) and protein oxidation (protein carbonyls). It also increased total antioxidant power and molecular antioxidant levels (total ascorbate, glutathione and tocopherols). F2.7 improved the primary metabolism of stressed maize plants; for example, it increased in several individuals of soluble carbohydrates, organic acids, amino acids, and fatty acids. Interestingly, to reduce stress impact, F2.7 accumulated some compatible solutes including total soluble sugars, sucrose and proline. Hence, this comprehensive assessment recommends the potentials of actinobacterial cell-free extract as an alternative ecofriendly approach to improve crop growth and quality under water deficit conditions.

Mohamed, M. S. M., H. M. Mostafa, S. Mohamed, S. I. Abd El-Moez, and Z. Kamel, "Combination of Silver Nanoparticles and Vancomycin to Overcome Antibiotic Resistance in Planktonic/Biofilm Cell from Clinical and Animal Source", Microbial Drug ResistanceMicrobial Drug Resistance: Mary Ann Liebert, Inc., publishers, 2020. AbstractWebsite

This study aims to evaluate the prevalence of multidrug-resistant (MDR) and biofilm-forming pathogens from animal source compared to clinical ones. In addition, to assess the antibacterial and antibiofilm activity of silver nanoparticles (AgNPs) alone and/or mixed with vancomycin. Out of 62 bacterial isolates from animal respiratory tract infection (RTI), 50.00% were defined as MDR, while among human ones, 44.00% were MDR. The bacteria Staphylococcus aureus, Pseudomonas aeruginosa, and Streptococcus pneumoniae were the predominant isolated bacteria from both animal and human origin with frequency percentage of 50.00, 22.32, and 18.75, respectively. Among Staph. aureus strains, mecA gene was detected in 60.00% and 61.54% of animal and human isolates, respectively, while mecALGA251 (mecC) gene was detected in 13.33% and 15.38% of animal and human isolates, respectively. Biofilm formation ability among animal isolates was 83.87%, while among human ones was 86.00%. AgNPs were effective in inhibiting planktonic cells with minimal inhibitory concentration (MIC) values (0.625?10??g/mL), as well as eradicating biofilm with minimal biofilm eradication concentration values (1.25?10??g/mL). Noticeable low MIC of AgNPs was required for the isolates from animal source (0.625?5??g/mL) compared to clinical ones (0.625?10??g/mL). Remarkable reduction in AgNP effective concentration was observed after combination with 1/4 MIC of vancomycin with minimum recorded concentration of 0.08??g/mL. In conclusion, the prevalence of MDR among RT pathogens was recorded with high ability to produce biofilm and virulence factors from both animal and human pathogens. AgNPs showed strong antibacterial and antibiofilm activity alone and mixed with vancomycin, with up to fourfold reduction of AgNP inhibitory dose.This study aims to evaluate the prevalence of multidrug-resistant (MDR) and biofilm-forming pathogens from animal source compared to clinical ones. In addition, to assess the antibacterial and antibiofilm activity of silver nanoparticles (AgNPs) alone and/or mixed with vancomycin. Out of 62 bacterial isolates from animal respiratory tract infection (RTI), 50.00% were defined as MDR, while among human ones, 44.00% were MDR. The bacteria Staphylococcus aureus, Pseudomonas aeruginosa, and Streptococcus pneumoniae were the predominant isolated bacteria from both animal and human origin with frequency percentage of 50.00, 22.32, and 18.75, respectively. Among Staph. aureus strains, mecA gene was detected in 60.00% and 61.54% of animal and human isolates, respectively, while mecALGA251 (mecC) gene was detected in 13.33% and 15.38% of animal and human isolates, respectively. Biofilm formation ability among animal isolates was 83.87%, while among human ones was 86.00%. AgNPs were effective in inhibiting planktonic cells with minimal inhibitory concentration (MIC) values (0.625?10??g/mL), as well as eradicating biofilm with minimal biofilm eradication concentration values (1.25?10??g/mL). Noticeable low MIC of AgNPs was required for the isolates from animal source (0.625?5??g/mL) compared to clinical ones (0.625?10??g/mL). Remarkable reduction in AgNP effective concentration was observed after combination with 1/4 MIC of vancomycin with minimum recorded concentration of 0.08??g/mL. In conclusion, the prevalence of MDR among RT pathogens was recorded with high ability to produce biofilm and virulence factors from both animal and human pathogens. AgNPs showed strong antibacterial and antibiofilm activity alone and mixed with vancomycin, with up to fourfold reduction of AgNP inhibitory dose.

Mohamed, M. S. M., N. I. El-Arabi, A. El-Hussein, S. A. El-Maaty, and A. A. Abdelhadi, Reduction of chromium-VI by chromium-resistant Escherichia coli FACU: a prospective bacterium for bioremediation, , vol. 65, issue 4, pp. 687 - 696, 2020. AbstractWebsite

The release of hexavalent chromium [Cr (VI)] into environments has resulted in many undesirable interactions with biological systems for its toxic potential and mutagenicity. Chromate reduction via chromium reductase (ChrR) is a key strategy for detoxifying Cr (VI) to trivalent species of no toxicity. In this study, ten bacterial isolates were isolated from heavily polluted soils, with a strain assigned as FACU, being the most efficient one able to reduce Cr (VI). FACU was identified as Escherichia coli based on morphological and 16S rRNA sequence analyses. Growth parameters and enzymatic actions of FACU were tested under different experimental conditions, in the presence of toxic chromium species. The E. coli FACU was able to reduce chromate at 100 μg/mL conceivably by reducing Cr (VI) into the less harmful Cr (III). Two distinctive optical spectroscopic techniques have been employed throughout the study. Laser-induced breakdown spectroscopy (LIBS) was utilized as qualitative analysis to demonstrate the presence of chromium with the distinctive spectral lines for bacteria such as Ca, Fe, and Na. While UV-visible spectroscopy was incorporated to confirm the reduction capabilities of E. coli after comparing Cr (III) spectrum to that of bacterial product spectrum and they were found to be identical. The chromate reductase specific activity was 361.33 μmol/L of Cr (VI) per min per mg protein. The FACU (EMCC 2289) 16S rRNA sequence and the ChrR-partially isolated gene were submitted to the DDBJ under acc. # numbers LC177419 and LC179020, respectively. The results support that FACU is a promising source of ChrR capable of bioremediation of toxic chromium species.

Al Kashgry, N. A. T., H. H. Abulreesh, I. A. El-Sheikh, Y. A. Almaroai, R. Salem, I. Mohamed, F. R. Waly, G. Osman, and M. S. M. Mohamed, Utilization of a recombinant defensin from Maize (Zea mays L.) as a potential antimicrobial peptide, , vol. 10, issue 1, pp. 208, 2020. AbstractWebsite

The search for effective and bioactive antimicrobial molecules to  encounter the medical need for new antibiotics is an encouraging area of research. Plant defensins are small cationic, cysteine-rich peptides with a stabilized tertiary structure by disulfide-bridges and characterized by a wide range of biological functions. The heterologous expression of Egyptian maize defensin (MzDef) in Escherichia coli and subsequent purification by glutathione affinity chromatography yielded 2 mg/L of recombinant defensin peptide. The glutathione-S-transferase (GST)-tagged MzDef of approximately 30 kDa in size (26 KDa GST +  ~ 4 KDa MzDef peptide) was immunodetected with anti-GST antibodies. The GST-tag was successfully cleaved from the MzDef peptide by thrombin, and the removal was validated by the Tris-Tricine gel electrophoresis. The MzDef induced strong growth inhibition of Rhizoctonia solani, Fusarium verticillioides, and Aspergillus niger by 94.23%, 93.34%, and 86.25%, respectively, whereas relatively weak growth inhibitory activity of 35.42% against Fusarium solani was recorded. Moreover, strong antibacterial activities were demonstrated against E. coli and Bacillus cereus and the moderate activities against Salmonella enterica and Staphylococcus aureus at all tested concentrations (0.1, 0.2, 0.4, 0.8, 1.6, and 3.2 µM). Furthermore, the in vitro MTT assay exhibited promising anticancer activity against all tested cell lines (hepatocellular carcinoma, mammary gland breast cancer, and colorectal carcinoma colon cancer) with IC50 values ranging from 14.85 to 29.85 µg/mL. These results suggest that the recombinant peptide MzDef may serve as a potential alternative antimicrobial and anticancer agent to be used in medicinal application.

Mohamed SH, Elshahed MMS, Saied YM, Mohamed MSM, and O. GH., "Detection of Heavy Metal Tolerance among different MLSB Resistance Phenotypes of Methicillin-Resistant S. aureus (MRSA).", J Pure Appl Microbiol., vol. 14, issue (3), pp. 1905-1916, 2020. jpam_vol_14_issue3_p_1905-1916.pdf
Abdelmohsen, G., G. T. M. Dawoud, and M. S. M. Mohamed, "Investigation of the biochemical and ultrastructural mechanisms underlying the antimicrobial activity of Mimusops spp. extracts", Baghdad Science Journal, vol. 17, no. 2, pp. 452-462, 2020. AbstractWebsite
n/a
Yehia, R. S., G. H. Osman, H. Assaggaf, R. Salem, and M. S. M. Mohamed, "Isolation of potential antimicrobial metabolites from endophytic fungus Cladosporium cladosporioides from endemic plant Zygophyllum mandavillei", South African Journal of Botany, 2020. AbstractWebsite

This study aimed to test and evaluate antibacterial and antifungal activities of secondary metabolites obtained from endophytic fungi isolated from the leaves of endemic plant Zygophyllum mandavillei. The fungus Cladosporium cladosporioides was the predominant isolated fungus with colonization and dominance frequencies percentage of 12.50 and 39.32 respectively. C. cladosporioides extract was found to have the best antimicrobial activity causing a zone of inhibition ranging from 20.7 to 25.7 mm against all tested bacterial and fungal phytopathogens. Gas Chromatography/Mass Spectrometry (GC/MS) analysis of the extract successfully identified six major compounds: Cladosporin, Isocladosporin, 5′- hydroxyasperentin, Di (2-ethylhexyl) phthalate, 1-acetyl-17-methoxyaspidospermidin-20-ol, and 3-phenylpropionic acid. Enhanced antimicrobial activity was recorded for 3-phenylpropionic acid with MIC value ranging from 3.90 to 15.62 μg/ml followed by 5′- hydroxyasperentin with MIC ranging from 7.81 to 62.5 μg/ml. The most effective compound, 3-phenylpropionic acid, was further characterized by Fourier transform infrared spectroscopy (FT-IR) in addition to nuclear magnetic resonance (NMR) and mass spectroscopy to elucidate the chemical structure. The cytotoxicity of 3-phenylpropionic acid revealed a lower level of cytotoxicity at the concentration range 0.01–10 µg/ml as indicated by the cell viability percentage which is ranging from 75.47–94.14%. These results suggested that 3-phenylpropionic acid may serve as a potential alternative approach for the management of plant phytopathogens.