Publications in the Year: 2021

Journal Article

Shao B, Sun H, Ahmad MJ, Ghanem N, Abdel-Shafy H, Du C, Deng T, Mansoor S, Zhou Y, Yang Y et al..  2021.  Genetic Features of Reproductive Traits in Bovine and Buffalo: Lessons From Bovine to Buffalo. 12:366. AbstractWebsite

Bovine and buffalo are important livestock species that have contributed to human lives for more than 1000 years. Improving fertility is very important to reduce the cost of production. In the current review, we classified reproductive traits into three categories: ovulation, breeding, and calving related traits. We systematically summarized the heritability estimates, molecular markers, and genomic selection (GS) for reproductive traits of bovine and buffalo. This review aimed to compile the heritability and genome-wide association studies (GWASs) related to reproductive traits in both bovine and buffalos and tried to highlight the possible disciplines which should benefit buffalo breeding. The estimates of heritability of reproductive traits ranged were from 0 to 0.57 and there were wide differences between the populations. For some specific traits, such as age of puberty (AOP) and calving difficulty (CD), the majority beef population presents relatively higher heritability than dairy cattle. Compared to bovine, genetic studies for buffalo reproductive traits are limited for age at first calving and calving interval traits. Several quantitative trait loci (QTLs), candidate genes, and SNPs associated with bovine reproductive traits were screened and identified by candidate gene methods and/or GWASs. The IGF1 and LEP pathways in addition to non-coding RNAs are highlighted due to their crucial relevance with reproductive traits. The distribution of QTLs related to various traits showed a great differences. Few GWAS have been performed so far on buffalo age at first calving, calving interval, and days open traits. In addition, we summarized the GS studies on bovine and buffalo reproductive traits and compared the accuracy between different reports. Taken together, GWAS and candidate gene approaches can help to understand the molecular genetic mechanisms of complex traits. Recently, GS has been used extensively and can be performed on multiple traits to improve the accuracy of prediction even for traits with low heritability, and can be combined with multi-omics for further analysis.

Abdel-Shafy H.  2021.  Genomic Selection: Towards Meeting Challenge of Food Security. Annals of Agricultural Science, Moshtohor. 59(2):1-8. AbstractWebsite

Breeding is a powerful science and remains a core component of most agriculture production. Although traditional selection has proven to be a successful approach for improving animal and plant production in the last decades, several studies have reported a worrying shortage between the current rates of production and expected global future demands for food. These challenges, coupled with a constant loss of suitable land for agricultural production, needs to implement new breeding strategies to significantly increase the genetic gain and meet the future requirements. Recent advances in genotyping capacity with affordable costs have allowed selection based on genomic information. These technologies would reshape the breeding programs, accelerate the genetic gain and maximize the productivity per unit. Although this concept was suggested many decades ago, the applications of marker-assisted selection were limited due to the low number of genotyped markers and low number of identified QTL. In contrast, genomic selection (GS) utilizes the dense genetic markers across the whole genome to predict the effect of all QTL that are assumed to be in linkage disequilibrium with at least one genetic marker. Nowadays, GS is widely implemented in several species for breeding purposes and attracted attention for human disease risk predictions. It has been proven for many traits to double the rate of the genetic gain and reduce the generation interval, which would efficiently contribute to more food security. Here, we introduce the general concept of GS, and briefly describe the GS models along with the recent progress in some farm animal species.

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