Allam, A., P. Kalnis, and V. Solovyev, "Karect: Accurate Correction of Substitution, Insertion and Deletion Errors for Next-generation Sequencing Data", Bioinformatics, vol. 31, no. 21, pp. 3421–3428, 2015. AbstractWebsite

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Mansour, E., A. Allam, S. Skiadopoulos, and P. Kalnis, "ERA: Efficient Serial and Parallel Suffix Tree Construction for Very Long Strings", Proc. VLDB Endow., vol. 5, no. 1: VLDB Endowment, pp. 49–60, 2011. AbstractWebsite
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Fahmy, A., and A. Allam, "An Arabic-Disambiguating Engine Based on Statistical Approaches", 5th International Conference on Informatics and Systems (INFOS), Cairo University, P235-246, Giza, Egypt, 2007. Abstract
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Omara, F. A., and A. Allam, "An efficient tasks scheduling algorithm for distributed memory machines with communication delays", Information Technology Journal (ITJ), vol. 4, pp. 326–334, 2005. Abstract
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Shaalan, K., A. Allam, and A. Gomah, "Towards automatic spell checking for Arabic", Conference on Language Engineering, ELSE, Cairo, Egypt, 2003. Abstract
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